Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium409g00005 ATGGCGATACAAGGCAAAAATGCATTTACTAGATCAAGGGGTGGTCCTCCAATTGGAGATGAAATATGTTTGAGTCCCGGTGTGCATTCTGTTGCTGATATTTCACTACATGATCAGTTTTCTTGTGGAAATGACTATGCCTTGAAGGTAAGGAAACCGTATACAATCACAAAGCAGAGGGAGAGGTGGACAGATGAAGAACACAAGAAGTTCCTTGAAGCCTTAAAGCTATATGGCAGGGCCTGGCGAAGGATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATTGTTAGAGAGACTAGTGGGAACAGCACAGCCTTGGAGGAATCAATTGAAATTCCACCTCCCCGACCAAAAAGGAAGCCAATTCATCCTTACCCTCGTAAACTGATTGAGATTCCAAAGAAAGAGATTTCCAATTCAGAACACCCTCTGAGGTCTATTTCTCTCAAGTCATCAGATTTTGGTCAAGAAAACAATTCTCCCAAGTCGGTGTTATCTACTGTTATTTCCGAAAACCTTGGTTCCTCCGATTCAGACACACCCACTGGAAGTTTGTCACCAGTCTCATCCATTAGTGGTGTCCTCACAAACAGATTTCCACTAGCTCAACCCAAAACATCATTTGAGGAAGAAGGGTCTCTACCAAGTTCAGCTCATGACGAGCAACATCTCGTGAAACTGAAGCTTTTTCACAAAGAAACTGTTTCTACCAAAGATGACGCAGCTGAGGAATCATGTGGTCGTACTCTCAAACTTTTTGGGACCACTCTACTTGTAACAGATACAAGCAAACCCTTTTCTCTAATAACGGAGCCATTCAAACCAATACCTGCGGCTGCAACATATCTTATGCAACTTCAAAACGGGTGTTCTGATCTTGCAGAAAGTCCTGCAAGTATTGTTCCAAGGTGGACTTTTTCACATAACGCACTATCTGTGCCCCTGCACAGGGAGCTAAAAGGGAAACACCTATACTCTAATCTTGGAGATTTTGAACATAAAGAGGTTCAAAAGGAAGGATCATGGACTGGTTCAAACACTAGTTCAGTTAATGATGGAGACAACACTGCACCAAGTGAAACATCAGGTATATTTGAGCTAAGAGTGAGAGCTAAAACCTGTGGGAAAGGGTTTGTGCCATACAAAAGGTGCATGGCAGAGAGAGAAAACAAATACTCATCAGTTTGTGACGAGGAGAGGGAAGAGCAACGTGTCAAGCTTTCCTTATAG 1269 0.4255 MAIQGKNAFTRSRGGPPIGDEICLSPGVHSVADISLHDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKIVRETSGNSTALEESIEIPPPRPKRKPIHPYPRKLIEIPKKEISNSEHPLRSISLKSSDFGQENNSPKSVLSTVISENLGSSDSDTPTGSLSPVSSISGVLTNRFPLAQPKTSFEEEGSLPSSAHDEQHLVKLKLFHKETVSTKDDAAEESCGRTLKLFGTTLLVTDTSKPFSLITEPFKPIPAAATYLMQLQNGCSDLAESPASIVPRWTFSHNALSVPLHRELKGKHLYSNLGDFEHKEVQKEGSWTGSNTSSVNDGDNTAPSETSGIFELRVRAKTCGKGFVPYKRCMAERENKYSSVCDEEREEQRVKLSL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium409g00005 422 MobiDBLite consensus disorder prediction 353 373 - -
Vium409g00005 422 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Vium409g00005 422 PANTHER SWI/SNF COMPLEX-RELATED 44 360 - -
Vium409g00005 422 SUPERFAMILY Homeodomain-like 54 108 IPR009057 -
Vium409g00005 422 SMART sant 59 107 IPR001005 -
Vium409g00005 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Vium409g00005 422 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Vium409g00005 422 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Vium409g00005 422 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Vium409g00005 422 MobiDBLite consensus disorder prediction 119 138 - -
Vium409g00005 422 CDD SANT 62 105 IPR001005 -
Vium409g00005 422 MobiDBLite consensus disorder prediction 351 373 - -
Vium409g00005 422 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Vium409g00005 422 Gene3D - 62 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium409g00005 Vium-Chr409 20526 23637 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium409g00005 Myb_DNA-binding 9.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium409g00005 - - gmx:778060 665.996