Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium409g00004 ATGTCACCACCGTACGCGGTTGCCGCAGCACTGTCCACACTCTCCATTCTTCTTACACTCGTTTCCTCTCACTATTCCTCCTCTTCCTCCGACTATCCTCCCTCTCTGCAGGCTTCGCCGGAGTTCGCAGAGTGGCGATCCGCGCACGCCACCTTCTACGTCGCAGCGGATCCCCGCGACGCCGTGGGAGGTGCGTGCGGCTATGGTGACCTCGTCAAGGGCGGCTACGGCATGGCCACAGTGGGCCTCAGCGAGACGCTGTTCGAGCGCGGCCAGATCTGTGGCGCGTGCTTCGAGCTGCGCTGCGTGGACGACAACCGGTGGTGCATTCCCGGCACATCCATCATCGTCACGGCCACGAACTTCTGCGCCCCCAACTACGGATTCACCTCCGACGGCGGTGGCCACTGTAACCCTCCCAACAAACACTTCGTTCTCCCCATCGAATCCTTTGAGAAGATCGCCATTTGGAAAGCCGGCAACATGCCCGTACAGTACCGCAGGATAAAGTGTAGGAAGGAAGGAGGGATTCGATTTACTGTTACTGGTTCTGGAATCTTCATATCGGTGCTGATCAGCAATGTTGCTGGTCATGGAGACATAGTGGCTGTGAAGGTTAAAGGGTCAAGAACTGGTTGGCTTCCCATGGGTCGGAATTGGGGGCAAATTTGGCATGTAAATGCATTGCTGCAGAATCAACCTCTTTCATTCGAAGTTACTTCTAGTGATGGCAAAACTCTTACATCTTACAATGTTGCTCCCAAGGATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGACTTGA 813 0.5461 MSPPYAVAAALSTLSILLTLVSSHYSSSSSDYPPSLQASPEFAEWRSAHATFYVAADPRDAVGGACGYGDLVKGGYGMATVGLSETLFERGQICGACFELRCVDDNRWCIPGTSIIVTATNFCAPNYGFTSDGGGHCNPPNKHFVLPIESFEKIAIWKAGNMPVQYRRIKCRKEGGIRFTVTGSGIFISVLISNVAGHGDIVAVKVKGSRTGWLPMGRNWGQIWHVNALLQNQPLSFEVTSSDGKTLTSYNVAPKDWTFGQTFEGKQFET 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium409g00004 270 Gene3D - 33 172 IPR036908 -
Vium409g00004 270 PANTHER EXPANSIN-A15 22 268 IPR002963 GO:0009664
Vium409g00004 270 Pfam Expansin C-terminal domain 177 254 IPR007117 -
Vium409g00004 270 SUPERFAMILY Barwin-like endoglucanases 44 194 IPR036908 -
Vium409g00004 270 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 176 IPR007112 -
Vium409g00004 270 Pfam Lytic transglycolase 81 166 IPR009009 -
Vium409g00004 270 CDD DPBB_EXPA_N 44 171 - -
Vium409g00004 270 SUPERFAMILY PHL pollen allergen 173 265 IPR036749 -
Vium409g00004 270 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 265 IPR007117 -
Vium409g00004 270 SMART dpbb_1 80 166 IPR007112 -
Vium409g00004 270 Gene3D - 176 268 IPR036749 -
Vium409g00004 270 PRINTS Expansin signature 187 208 IPR002963 GO:0009664
Vium409g00004 270 PRINTS Expansin signature 134 151 IPR002963 GO:0009664
Vium409g00004 270 PRINTS Expansin signature 251 267 IPR002963 GO:0009664
Vium409g00004 270 PRINTS Expansin signature 115 125 IPR002963 GO:0009664
Vium409g00004 270 PRINTS Expansin signature 102 113 IPR002963 GO:0009664
Vium409g00004 270 PRINTS Expansin signature 222 243 IPR002963 GO:0009664
Vium409g00004 270 PRINTS Expansin signature 75 89 IPR002963 GO:0009664
Vium409g00004 270 PRINTS Expansin signature 175 187 IPR002963 GO:0009664
Vium409g00004 270 PRINTS Expansin signature 151 164 IPR002963 GO:0009664
Vium409g00004 270 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Vium409g00004 270 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Vium409g00004 270 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Vium409g00004 270 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Vium409g00004 270 PRINTS Expansin/Lol pI family signature 159 175 IPR007118 GO:0005576
Vium409g00004 270 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium409g00004 Vium-Chr409 12830 15006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium409g00004 44 270 Expansin Gene Family AT3G03220 85.463 2.44e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium409g00004 - - gmx:100784516 472.241