Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4096g00004 ATGGAGAGCCTCCCGCTTGAGACGGCGGAGAAGATCATTCTGCGATGGGACTCCACGGCGTCGGAAGATGCCCGGGACAATATGATATTCTCCGGCGACCGGGACGAGGCGGATCTCTACCTGCAGGCGGTGGATGAAATCCAGAGGTCCCTCTCCTCCGTTTCCGTTTCGGAGAAAGTCAACTCGGCCATCCAGATCGCCATGGCCCGCTTAGAAGACGAGTTCCGCAACATCCTCATCTCCCACACCAACTCCTTCGACCCCACCACAGAAGACGAAGCCTTGCAAACCCTTGACCCTCCTTCTTCTTCGTCTTCTCCCAAACACCCTGACAACGACGAAAGCGATGAAGTTAGCCAGACTTCTCTCCTCCGTTTCAACAGTGACGGCGCTGCTTCCTCCGTCACGGGAAGCTACCGCTCCACCAGCAGCATCCGCGAGATCGATCTCATCCCCTCCGACGCCGTCTACGACCTCCGTTGCATCGCCGAACGCATGGTCTCCTCCGGCTACTTGCGCGAGTGCATCCAGGTGTATGGCAGCGTCAGGAAATCCTTCGTCGACGCCAGCTTCCGCAAGCTCGGTATCGAGAAGCTCAGCATCGGCGACGTGCAGCGCCTCCAGTGGGAGCAGCTCGAGAACAAAATCAGACGCTGGATACGAGCCGCGAAAGTCTGCGTCAGGACGCTCTTTGCCAGTGAAAAGAAGCTCTGCGAGCAAATCTTCGATGGAGTTGGAACCTCCATCGATGACGCTTGTTTCATGGAGACTGTGAAGGGCCCTGCGATTCAGCTCTTCAACTTCGCCGAGGCCATTAGTATTAGCCGAAGGTCGCCGGAGAAGTTGTTCAAGATTCTTGATTTGCACGATGCGTTGACGGAATTGATGCCGGATATTGATGTTGTGTTTGATTCCAAGTCCTCCGAGACTATTAGGGTTCAGGCAGCGGAGATTTTGTCGAGGTTGGGGGAGGCTGCTAGGGGGATTTTGTCGGAGTTTGAGAACGCTGTGCTTAAGGAACCCTCTAGGGTTCCTGTTCCTGGCGGGACGATTCATCCTCTGACTCGGTATGTGATGAATTACATAAGTTTGATCTCTGATTACAAGGTTACTTTGAATGAGCTTATAGTGTCAAAGCCCTCCACGGGGTCCAGGTATTCGGGTGATCCTGGGATACCCGATTTGGATTTGAGTGAGTTTGAGGAGAAGACCCCTTTGGATGTGCATTTGATTTGGATTATTGTGATTTTACAATTCAACTTGGATGGGAAGAGTAAGCACTACAAGGACGCTTCTTTGGCTCATTTGTTTGTGATGAACAATGTGCACTACATTGTGCAGAAGGTGAGGGGGAGTCCAGAGTTGAGGGAGATGATCGGGGATGATTATTTGAAGAAGCTCACCGGAAAGTTCCGGCAGGCAGCTACGAGCTACCAGAGGGCAACGTGGGTGAGGGTGCTGTATTGTTTGAGGGATGAGGGGTTGCATGTGAGTGGGGGGTTTTCTTCTGGGGTGTCCAAGAGTGCTCTCAGGGAGAGGTTTAAGGCTTTTAATGCCATGTTTGAGGAGGTTCACAGGACTCAGGCAGTTTGGTTGATACCGGATTCGCAACTAAGGGAGGAGCTGAGGATATCGATATCGGAGAAGCTGATTCCGGCGTATAGGTCGTTTCTTGGGAGGTTCAGGGGCCACATAGAGAGTGGGAGGCATCCGGAGAATTACATCAAGTACTCTGTTGAGGACCTAGAGGATGCCGTTTTGGACTTTTTTGAAGGGGTTACTGTTTCCCAGCACTTGAGGAGGAGATCTGAATGA 1815 0.5245 MESLPLETAEKIILRWDSTASEDARDNMIFSGDRDEADLYLQAVDEIQRSLSSVSVSEKVNSAIQIAMARLEDEFRNILISHTNSFDPTTEDEALQTLDPPSSSSSPKHPDNDESDEVSQTSLLRFNSDGAASSVTGSYRSTSSIREIDLIPSDAVYDLRCIAERMVSSGYLRECIQVYGSVRKSFVDASFRKLGIEKLSIGDVQRLQWEQLENKIRRWIRAAKVCVRTLFASEKKLCEQIFDGVGTSIDDACFMETVKGPAIQLFNFAEAISISRRSPEKLFKILDLHDALTELMPDIDVVFDSKSSETIRVQAAEILSRLGEAARGILSEFENAVLKEPSRVPVPGGTIHPLTRYVMNYISLISDYKVTLNELIVSKPSTGSRYSGDPGIPDLDLSEFEEKTPLDVHLIWIIVILQFNLDGKSKHYKDASLAHLFVMNNVHYIVQKVRGSPELREMIGDDYLKKLTGKFRQAATSYQRATWVRVLYCLRDEGLHVSGGFSSGVSKSALRERFKAFNAMFEEVHRTQAVWLIPDSQLREELRISISEKLIPAYRSFLGRFRGHIESGRHPENYIKYSVEDLEDAVLDFFEGVTVSQHLRRRSE 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4096g00004 604 MobiDBLite consensus disorder prediction 86 119 - -
Vium4096g00004 604 MobiDBLite consensus disorder prediction 86 108 - -
Vium4096g00004 604 PANTHER EXOCYST COMPLEX PROTEIN EXO70 6 592 IPR004140 GO:0000145|GO:0006887
Vium4096g00004 604 SUPERFAMILY Cullin repeat-like 25 591 IPR016159 -
Vium4096g00004 604 FunFam Exocyst subunit Exo70 family protein 23 598 - -
Vium4096g00004 604 Gene3D Exocyst complex component Exo70 12 600 - -
Vium4096g00004 604 Pfam Exo70 exocyst complex subunit 218 586 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4096g00004 Vium-Chr4096 37115 40131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4096g00004 6 604 EXO70 exocyst subunit family AT1G72470 70.407 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4096g00004 K07195 - gmx:100808671 1072