Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4096g00003 ATGGCCAACAGTGATATTTCATTCGCTAATCTACCAATTCCCACGAAGAAAAAATGGAGCAAATGGAGTACACAGATGCGAGTCCTATTCAGATACCAAGATGTGCATGAGGTGGTTGACGGTGATCATCAAGAATTTCCTGTGGGTGAAGTTGATGATCAGAAGGCCAAGGAGAGAAAGAAAGACAATAAAAAGTTGTTCATTATTCACCAATGTGTAGACGATGCTCACTTTGAAAAAATCCAGCATGCAAAGACTGCGAGAGAAGCTTGGAGTATCTTGATCAGGTGTCATACTAGAGGAGAAAAGATCAAGAAGGTCAAGTTGCAGACATTAAGGAGGCAGTATGAGTTGATGCAGATGATGGAGGGTGATAGAGTTAGAGAGTACTTTGATAAAGTGATTGCCATCACCAATCAAATGAAGGGATGTGGAGAAGTCATCACAGACTTAATGGTCATTAAAAAGATCATGAGGTCTTTGCCTCAGAAATTCAATTACATAGTTGTGGCTATAGAAGAATCAAGAGAGCTGGATAAGATGAAGATAGAAGAATTGGATGTGGATGCAAATACATTGCCAGCAGTTAAAAAATCATCGTCCAGAAGAGGATCTGCAGCTTCTCAAAGTAAAGGCGTTGGAGAACTTGTGATAGTGAATGATGAGAAGGGCGTGTTTGGATTGCCAGATTTGATGAGGGCAGCAGCAGAAGTTCTGGGAAACGGTAGCTTTGGATCTTCTTACAAAGCCGTCATGGCTAATGGAGTGGCAGTGGTGGTGAAAAGGACCAGAGAGATGAATGTTTTGGAAAAAGATGGTTTTGATGCAGAGATGAGGAAGCTCACTTCGCTTAAACACTGGAATATATTGACCCCTTTAGCTTATCATTTCAGAAAGGATGAGAAACTAGTGATCTCTGAGTATGTTCCCAAAGGCAGTCTACTGTTTTCACTTCATGGTGACAGAGGATCATCGCATACTGAGCTGGATTGGCCTGCACGTATGAAGGTTGTAGGTGGAATTGCGGAAGGGATGAATTATCTTCACAAAGAACTTGGTTCCTCAGATCTCCCACATGGGAATCTCAAGTCCAGCAACGTTCTACTGGGACCAGACAATGAACCACTGCTTGTAGATTACGGATTCAGCGGCATGGTTAACCCTTCAAGTGCTGCACAGACACTATTTGCTTACAAGGCACCAGAGGCAGCAGAAAACGGGGAAATTTCACATAGCTGTGATGTTTACTGTCTCGGGGTTGTGATACTTGAGATACTCACTGGGAAATTTCCTTCACAATATCTTAGCACTGGGAAAGGTGGAACTGATGTGGTGCAATGGGTTGAAACAGCAATCTCAGAGGGCAGGGTGGCTGAAGTGGTTGATCCAGAAATTGCAAACTCTAGAAAATCGGTAGGTGAGATGGAGCAACTCCTGCACATCGGTGCTGCTTGCACGAGAAGCAACCCTCTGCAACGGTTAGGCATGGAGGAAGCCTTTAGAAGGATAGATCAGGTAAGATCCGAGAGTGGCCTTGTCAAAGGATCAAGAACGACAGAGGTGTTGCCATCTTTGGTAGATGACTATGAAGATGCACAAGAATTTGAGAGCCAAGGGCATTTTGACAACTCACACAGAAGACATGGAACAGATAGCTTCGGAAGTGTGGATAATATTGAACTTGGCAGCTCCTAG 1695 0.4366 MANSDISFANLPIPTKKKWSKWSTQMRVLFRYQDVHEVVDGDHQEFPVGEVDDQKAKERKKDNKKLFIIHQCVDDAHFEKIQHAKTAREAWSILIRCHTRGEKIKKVKLQTLRRQYELMQMMEGDRVREYFDKVIAITNQMKGCGEVITDLMVIKKIMRSLPQKFNYIVVAIEESRELDKMKIEELDVDANTLPAVKKSSSRRGSAASQSKGVGELVIVNDEKGVFGLPDLMRAAAEVLGNGSFGSSYKAVMANGVAVVVKRTREMNVLEKDGFDAEMRKLTSLKHWNILTPLAYHFRKDEKLVISEYVPKGSLLFSLHGDRGSSHTELDWPARMKVVGGIAEGMNYLHKELGSSDLPHGNLKSSNVLLGPDNEPLLVDYGFSGMVNPSSAAQTLFAYKAPEAAENGEISHSCDVYCLGVVILEILTGKFPSQYLSTGKGGTDVVQWVETAISEGRVAEVVDPEIANSRKSVGEMEQLLHIGAACTRSNPLQRLGMEEAFRRIDQVRSESGLVKGSRTTEVLPSLVDDYEDAQEFESQGHFDNSHRRHGTDSFGSVDNIELGSS 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4096g00003 564 Gene3D Transferase(Phosphotransferase) domain 1 309 515 - -
Vium4096g00003 564 MobiDBLite consensus disorder prediction 536 553 - -
Vium4096g00003 564 Gene3D Phosphorylase Kinase; domain 1 205 308 - -
Vium4096g00003 564 SUPERFAMILY Protein kinase-like (PK-like) 237 501 IPR011009 -
Vium4096g00003 564 Pfam Protein kinase domain 237 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4096g00003 564 Pfam gag-polypeptide of LTR copia-type 59 186 - -
Vium4096g00003 564 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 195 509 IPR046959 -
Vium4096g00003 564 ProSiteProfiles Protein kinase domain profile. 233 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4096g00003 564 MobiDBLite consensus disorder prediction 536 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4096g00003 Vium-Chr4096 10610 12799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4096g00003 215 508 Receptor kinase-like Gene Family AT5G20690 60.544 6.95e-133 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium4096g00003 Pkinase 1.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4096g00003 - - vum:124836706 1113.98