Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4096g00002 ATGCAGGGGTCAGAAGAAAAAACAAGGGGAAAACGAAAAAATAGCAGAAGCAATGACCCGAAAGAAATCACAATCACATTCCTTGGTTTTGAATACGCCTTGAGCCAAATTTTGAGCAGAGTAATGGCCATAGCTCCGGCAACAATTCTCCGGCCAACTCTCATGATCATCGTCACTTTGCCTGTGATATATTCCATGACAGAAGCTGAAGCTTTGGTAAGTCTCAAAAGCACTTTCACCAATGCTCAACTTTTAAATGGTTGGGTGGCTGGTTCTGCACCTTGTAGTTTAGACGATCAATGGGAAGGTGTTGTTTGCAACAATGGCCTTGTCACGGGGCTTCGCCTTGGAGGAATAGGGTTAGTCGGGGAAATACACGTTGATCCATTGCTTGAACTCAAGGGTCTTCGAACTATTAGCCTTAACAACAACTCTTTCACAGGTTCCATGCCAGAGTTCAACCGAATAGGCTTTTTGAAAGCCTTGTATTTGCAAGGAAACAAGTTTTCTGGGGATATTCCTCAGGAATACTTCCAGAGAATGAGGTCTTTGAAGAAAGTGTGGCTTTCTGATAACCAATTCACGGGGAATATTCCACATTCATTGACTGAGATTTCTAGTCTTATGGAGTTGCACCTTGAAAATAACCAGTTTAGTGGAACCATTCCGGATTTCAAAAACCCAACATTGGAGGACATAAATCTTTCCAACAACAAATTGGAAGGTGAAGTTCCAGCTAGTTTGTTGAGATTCAGCGAGAACAGGTTTTCTGGGAATTCTGCTCTTTGTGGTGAGAAGATTGGCAAAACATGTGAAAAGCCAGCGGAGGTCCCAAGTCCTGCTCCCATTGATGCATCGGATGCTGCTGGTGATTCGCCTGTGCCACATAGTAGTACCCCATGGGAGGTTGCTGCCATTATAGTAGTGAGTGTAGTGCTTGTTTCAATAGTTGTATTTTTCATTGTGAGAACAAGAAAAAAGAAGGAGGAGGAGCGCTTTGATATCCTTGGAAATGATGCTAATGGTGGTGGTTCAGTGGAAGTTCAAGTGGCTACAACGGTGAAAAGGGATGTGGATGCAAATACATTGCCAGCAGTTAAAAAATCATCGTCCAGAAGAGGATCTGCAGCTTCTCAAAGTAAAGGCGTTGGAGAACTTGTGATAGTGAATGATGAGAAGGGCGTGTTTGGATTGCCAGATTTGATGAGGGCAGCAGCAGAAGTTCTGGGAAACGGTAGCTTTGGATCTTCTTACAAAGCCGTCATGGCTAATGGAGTGGCAGTGGTGGTGAAAAGGACCAGAGAGATGAATGTTTTGGAAAAAGATGGTTTTGATGCAGAGATGAGGAAGCTCACTTCGCTTAAACACTGGAATATATTGACCCCTTTAGCTTATCATTTCAGAAAGGATGAGAAACTAGTGATCTCTGAGTATGTTCCCAAAGGCAGTCTACTGTTTTCACTTCATGGTGACAGAGGATCATCGCATACTGAGCTGGATTGGCCTGCACGTATGAAGGTTGTAGGTGGAATTGCGGAAGGGATGAATTATCTTCACAAAGAACTTGGTTCCTCAGATCTCCCACATGGGAATCTCAAGTCCAGCAACGTTCTACTGGGACCAGACAATGAACCACTGCTTGTAGATTACGGATTCAGCGGCATGGTTAACCCTTCAAGTGCTGCACAGACACTATTTGCTTACAAGGCACCAGAGGCAGCAGAAAACGGGGAAATTTCACATAGCTGTGATGTTTACTGTCTCGGGGTTGTGATACTTGAGATACTCACTGGGAAATTTCCTTCACAATATCTTAGCACTGGGAAAGGTGGAACTGATGTGGTGCAATGGGTTGAAACAGCAATCTCAGAGGGCAGGGTGGCTGAAGTGGTTGATCCAGAAATTGCAAACTCTAGAAAATCGGTAGGTGAGATGGAGCAACTCCTGCACATCGGTGCTGCTTGCACGAGAAGCAACCCTCTGCAACGGTTAGGCATGGAGGAAGCCTTTAGAAGGATAGATCAGGTAAGATCCGAGAGTGGCCTTGTCAAAGGATCAAGAACGACAGAGGTGTTGCCATCTTTGGTAGATGACTATGAAGATGCACAAGAATTTGAGAGCCAAGGGCATTTTGACAACTCACACAGAAGACATGGAACAGATAGCTTCGGAAGTGTGGATAATATTGAACTTGGCAGCTCCTAG 2205 0.4449 MQGSEEKTRGKRKNSRSNDPKEITITFLGFEYALSQILSRVMAIAPATILRPTLMIIVTLPVIYSMTEAEALVSLKSTFTNAQLLNGWVAGSAPCSLDDQWEGVVCNNGLVTGLRLGGIGLVGEIHVDPLLELKGLRTISLNNNSFTGSMPEFNRIGFLKALYLQGNKFSGDIPQEYFQRMRSLKKVWLSDNQFTGNIPHSLTEISSLMELHLENNQFSGTIPDFKNPTLEDINLSNNKLEGEVPASLLRFSENRFSGNSALCGEKIGKTCEKPAEVPSPAPIDASDAAGDSPVPHSSTPWEVAAIIVVSVVLVSIVVFFIVRTRKKKEEERFDILGNDANGGGSVEVQVATTVKRDVDANTLPAVKKSSSRRGSAASQSKGVGELVIVNDEKGVFGLPDLMRAAAEVLGNGSFGSSYKAVMANGVAVVVKRTREMNVLEKDGFDAEMRKLTSLKHWNILTPLAYHFRKDEKLVISEYVPKGSLLFSLHGDRGSSHTELDWPARMKVVGGIAEGMNYLHKELGSSDLPHGNLKSSNVLLGPDNEPLLVDYGFSGMVNPSSAAQTLFAYKAPEAAENGEISHSCDVYCLGVVILEILTGKFPSQYLSTGKGGTDVVQWVETAISEGRVAEVVDPEIANSRKSVGEMEQLLHIGAACTRSNPLQRLGMEEAFRRIDQVRSESGLVKGSRTTEVLPSLVDDYEDAQEFESQGHFDNSHRRHGTDSFGSVDNIELGSS 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4096g00002 734 Pfam Protein kinase domain 407 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4096g00002 734 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Vium4096g00002 734 ProSiteProfiles Protein kinase domain profile. 403 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4096g00002 734 Gene3D Ribonuclease Inhibitor 155 273 IPR032675 -
Vium4096g00002 734 FunFam Nuclear pore complex protein NUP107 65 224 - -
Vium4096g00002 734 SUPERFAMILY L domain-like 92 252 - -
Vium4096g00002 734 MobiDBLite consensus disorder prediction 706 734 - -
Vium4096g00002 734 SUPERFAMILY Protein kinase-like (PK-like) 407 671 IPR011009 -
Vium4096g00002 734 MobiDBLite consensus disorder prediction 273 295 - -
Vium4096g00002 734 Pfam Leucine rich repeat N-terminal domain 68 107 IPR013210 -
Vium4096g00002 734 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 59 679 IPR046959 -
Vium4096g00002 734 MobiDBLite consensus disorder prediction 706 723 - -
Vium4096g00002 734 Gene3D Ribonuclease Inhibitor 62 154 IPR032675 -
Vium4096g00002 734 Pfam Leucine rich repeat 159 218 IPR001611 GO:0005515
Vium4096g00002 734 Gene3D Transferase(Phosphotransferase) domain 1 479 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4096g00002 Vium-Chr4096 6625 9054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4096g00002 47 676 Receptor kinase-like Gene Family AT3G42880 44.427 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vium4096g00002 Pkinase 3.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4096g00002 - - var:108346415 1390.56