Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4094g00006 ATGGACTCCATCGCCGGAGCTCCGCCTCACACAGCAACCCCTCCGTCGTCTCGGCCGTCGCCGTTTCCTGGCCGGGAAGACTGCTGGTCGGAGGAAGCCACGTTCACGCTCATCGAGGCATGGGGAGAACGCCACCTCGAACTCAACCGCGGGAACCTCCGCCAAAGGCACTGGCAGGAGGTTGCCGACACCGTCAACGCACGTCACGGCAACGCCGGCGCCAGGGCCCGCCGCACCGACGTGCAGTGCAAGAACCGCATCGACACGCTCAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGATTCCGGCGATTCCGCCACCGCCTGGCCGTTCTTCCGCCGCCTCGAGTTCCTCATCGGCGACAATTTCCCGGCAAAGAAGCCCTCCCCGCCGGAGTCAGGCTCCGCCGATCGGCGGAGCACTCCTCCGGCGAAGTCTCCGGCGTGGGCCCTCATTCCGGTCGGTCCTCGATCCCGCTCTCAGAAGCGGCCGACGCCGGCGGCGCCAGCGGCAGAGAGCGTTGCCGACTCATACTTCCGGCGGAATTTCTCGGTTTTTGCGGCAGCGGCGGCGGCGGCCGCGGAGGCTGATAGCGATAATTCGAACGGTTCTAAATGGAGCAGTGGGAGTGAGAAGAGAGAGAAGAAGAAAAGAGGAAGGGATTGGGAATTTGGTTACAGAGAGGTTGCAGAAGCGTTGGAGAGGTTTGGGGAGATTTATGAGAGAGTTGAAGAAGCTAAACAGAGGCAAATGGTTGAGTTGGAGAAACAGAGAATGCAGTTTGCTAAGGATTTGGAAACCCAGAGAATGAAACTCTTCATGGAAACTCAGCTTCACTTGCAAAAAATGAATCGCTCCAACTCCAAGCGTTCTTCTGCAACTGACAGTGTCTCATAG 903 0.588 MDSIAGAPPHTATPPSSRPSPFPGREDCWSEEATFTLIEAWGERHLELNRGNLRQRHWQEVADTVNARHGNAGARARRTDVQCKNRIDTLKKKYKIEKARVSDSGDSATAWPFFRRLEFLIGDNFPAKKPSPPESGSADRRSTPPAKSPAWALIPVGPRSRSQKRPTPAAPAAESVADSYFRRNFSVFAAAAAAAAEADSDNSNGSKWSSGSEKREKKKRGRDWEFGYREVAEALERFGEIYERVEEAKQRQMVELEKQRMQFAKDLETQRMKLFMETQLHLQKMNRSNSKRSSATDSVS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4094g00006 300 FunFam trihelix transcription factor ASIL2 29 96 - -
Vium4094g00006 300 MobiDBLite consensus disorder prediction 196 221 - -
Vium4094g00006 300 Pfam Myb/SANT-like DNA-binding domain 26 119 IPR044822 -
Vium4094g00006 300 Gene3D - 29 96 - -
Vium4094g00006 300 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 11 289 IPR044823 -
Vium4094g00006 300 MobiDBLite consensus disorder prediction 1 25 - -
Vium4094g00006 300 Coils Coil 231 262 - -
Vium4094g00006 300 MobiDBLite consensus disorder prediction 281 300 - -
Vium4094g00006 300 MobiDBLite consensus disorder prediction 125 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4094g00006 Vium-Chr4094 96122 100454 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4094g00006 180 296 Trihelix Transcription Factor Family AT3G14180 38.655 6.44e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium4094g00006 Myb_DNA-bind_4 2.9e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4094g00006 - - gmx:100784918 443.736