Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium408g00003 TTTGGGTTTTACGCCTACGACACTGTTTGGGTGCTTGCTTCTGCACTCGATGCGTTTTTCGGGAGTGGGGGAACATTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGGGGGGGAAGTTTTGAGCTTGATAGCATGGGAGTGTTTCTTGATGGTGAGAAGCTGCTTAAAAGAATTCTAGAGGTGAACAGAAGTGGTCTAACAGGGCAAATGATGTTTGGACAAGACGGAAACTTGGTGCATTCATCATATGAAGTAATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCTGAAACATCTGGCCTCCACACTGGTGAGTCTCCTAATCATTCCATTTCTGGTGATGGACTCTATGGTGTCATCTGGCCTGGTCAAACGACTCAAACCCCACGTGGATGGGTTTTTTCCAGCAATGGAAAACCCTTGAGAATTGGGGTGCCACTTAGAATTAGTTATCGTGAGTTTGTGTCAAGAACTGAGGGAACTGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACGGCTGCTCTCAGCTTGTTGCCTTATTCCGTTCCGTACAAGTTTGTTTCATTTGGAGATGGTAAAACCAACCCATTAAATTCAGATCTTCTTCACATGATAACAGTCGGTGCCTTCGATGCTGTGGTGGGAGACATAACCATTACTACTAACCGAACCAAGATAGTGGACTTTACACAGCCATATATTGAGTCCGGGCTAGTTGTTGTGGCACCTATCAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTAACACCATTCAGTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTGGTGGGAGCTGTTGTGTGGATTTTAGAGCGTCGCATAAATGATGATTTTAGAGGCCCTGCCAGAAGACAATTTGTCACCATTATTTGGTTTAGCTTCTCAACCTTATTTTTTGCACATAGAGAAAAAACTGTTAGCACCCTTGGTCGCTTTGTGCTGATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTACATTGCAAGTCTGACCTCCATCCTGACAGTGGAACAACTCTCTTCACCGATTAAAGGAATCGAAAGCTTAGTAATAAGCAACGATCGTATTGGTTTCCTGAGGGGTTCATTTGCTGAGAATTATCTGACCGAGGAGCTGAACATACACAGGTCCAGGCTTTTTCCTCTGAACTCCCCATCAGAATATGAAAAATCCTTGAAGGATGGAGCAGCTAACGGTGGTGTTGCTGCAATAATAGATGAACGTGCATATATGGAACTCTTCCTAGCCACTAGATGTGAATTTGGTATCGTGGGTCAGGAGTTCACCAAGATGGGATGGGGCTTTGGCTTCCCCAGGGAATCTCCTTTATCAATTGATATGTCAACTGCCATCCTTAAACTATCAGAAAACGGTAATCTCCAAAGAATTCATGACAAATGGCTGACGAGAAGTGCGTGCAGCTCAGAGGGTGCAAAACAAGGCATAGACAGACTTGAGCTAAACAGTTTTTGGGGTCTGTTCCTACTCAGTGGCATAGCATGCTTCATTGCTCTACTATGTTATGCTATTAGAATGGTTTACCGTTTTAGCAGAGACTCCAACAGTAACATTGAGCGCTCATCTCACTCTGATCGTCTCCGATCGTTCCTTTCCTTTGTGAATGAAAGAGAAGGGGAAGACACATACAGGCCAAAGAGGAGGCGAAAGGAGAAATGCTCCTGTAGAAAGGTAGTGCATGAAGGTGGATCTTTGGATGACTCAACTGTTAGTGTCCACATAGAAAATAATCCCAGTGCACAAGATTAA 1824 0.4342 FGFYAYDTVWVLASALDAFFGSGGTLSFSNDSSLNMLRGGSFELDSMGVFLDGEKLLKRILEVNRSGLTGQMMFGQDGNLVHSSYEVINVIGSGIRRIGYWSETSGLHTGESPNHSISGDGLYGVIWPGQTTQTPRGWVFSSNGKPLRIGVPLRISYREFVSRTEGTEMFGGYCIDVFTAALSLLPYSVPYKFVSFGDGKTNPLNSDLLHMITVGAFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFSPMMWFVTGMFFLVVGAVVWILERRINDDFRGPARRQFVTIIWFSFSTLFFAHREKTVSTLGRFVLIIWLFVVLILNSSYIASLTSILTVEQLSSPIKGIESLVISNDRIGFLRGSFAENYLTEELNIHRSRLFPLNSPSEYEKSLKDGAANGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFGFPRESPLSIDMSTAILKLSENGNLQRIHDKWLTRSACSSEGAKQGIDRLELNSFWGLFLLSGIACFIALLCYAIRMVYRFSRDSNSNIERSSHSDRLRSFLSFVNEREGEDTYRPKRRRKEKCSCRKVVHEGGSLDDSTVSVHIENNPSAQD 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium408g00003 607 FunFam Glutamate receptor 142 258 - -
Vium408g00003 607 Pfam Bacterial extracellular solute-binding proteins, family 3 206 488 IPR001638 -
Vium408g00003 607 SMART GluR_14 148 489 IPR001320 GO:0015276|GO:0016020
Vium408g00003 607 Pfam Ligand-gated ion channel 489 520 IPR001320 GO:0015276|GO:0016020
Vium408g00003 607 Gene3D - 4 82 - -
Vium408g00003 607 FunFam Glutamate receptor 384 491 - -
Vium408g00003 607 SUPERFAMILY Voltage-gated potassium channels 270 354 - -
Vium408g00003 607 Gene3D - 403 494 - -
Vium408g00003 607 Pfam Receptor family ligand binding region 4 92 IPR001828 -
Vium408g00003 607 SUPERFAMILY Periplasmic binding protein-like I 1 138 IPR028082 -
Vium408g00003 607 Gene3D - 83 107 - -
Vium408g00003 607 Gene3D - 147 257 - -
Vium408g00003 607 CDD GluR_Plant 145 487 - -
Vium408g00003 607 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 546 IPR015683 -
Vium408g00003 607 Gene3D - 258 392 - -
Vium408g00003 607 FunFam Glutamate receptor 258 388 - -
Vium408g00003 607 SUPERFAMILY Periplasmic binding protein-like II 123 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium408g00003 Vium-Chr408 34596 37004 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium408g00003 1 574 Ion Channels AT1G42540 61.111 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium408g00003 K05387 - gmx:100789442 1076.23