Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium408g00002 ATGCAGCAACATAATACTAAATATGTTCATAATGAGCACAAAGTGAGCAAGGAAAAGGATCCTGCTGAGGGTCCTTTCGCATTGAACACCTTTGGGTTTTACGCCTACGACACTGTTTGGGTGCTTGCTTCTGCACTCGATGCGTTTTTCGGGAGTGGGGGAACATTGTCATTTTCAAATGATTCAAGTCTAAACATGTTAAGGGGGGGAAGTTTTGAGCTTGATAGCATGGGAGTGTTTCTTGATGGTGAGAAGCTGCTTAAAAGAATTCTAGAGGTGAACAGAAGTGGTCTAACAGGGCAAATGATGTTTGGACAAGACGGAAACTTGGTGCATTCATCATACGAAGTAATTAATGTGATAGGCAGTGGAATTAGGAGGATTGGTTATTGGTCTGAAACATCTGGCCTCCACACTGGTGAGTCTCCTAATCATTCCATTTCTGGTGATGGACTCTATGGTGTCATCTGGCCTGGTCAAACGACTCAAACCCCACGTGGATGGGTTTTTTCCAGCAATGGAAAACCCTTGAGAATTGGGGTGCCACTTAGAATTAGTTATCGTGAGTTTGTGTCAAGAACTGAGGGAACCGAGATGTTTGGTGGTTATTGCATAGATGTGTTCACGGCTGCTCTCAGCTTGTTGCCTTATTCCGTTCCGTACAAGTTTGTTTCATTTGGAGATGGTAAAACCAACCCATTAAATTCAGATCTTCTTCACATGATAACAGTCGGTGCCTTCGATGCTGTGGTGGGAGACATAACCATTACTACTAACCGAACCAAGATAGTGGACTTTACACAGCCATATATTGAGTCCGGGCTAGTTGTTGTGGCACCTATCAAGAAGTTGAAATCCAGTGCTTGGGCTTTCCTAACACCATTCAGTCCAATGATGTGGTTTGTGACAGGAATGTTTTTCTTAGTGGTGGGAGCTGTTGTGTGGATTTTAGAGCGTCGCATAAATGATGATTTTAGAGGCCCTGCCAGAAGACAATTTGTCACCATTATTTGGTTTAGCTTCTCAACCTTATTTTTTGCACATAGAGAAAAAACTGTTAGCACCCTTGGTCGCTTTGTGCTGATCATATGGCTGTTTGTGGTTTTGATACTCAACTCAAGCTACATTGCAAGTCTGACCTCCATCCTGACAGTGGAACAACTCTCTTCACCGATTAAAGGAATCGAAAGCTTAGTAATAAGCAACGATCGTATTGGTTTCCTGAGGGGTTCATTTGCTGAGAATTATCTGACCGAGGAGCTGAACATACACAGGTCCAGGCTTATTCCTCTGAACTCCCCATCAGAATATGAAAAATCCTTGAAGGATGGAGCAGCTAACGGTGGTGTTGCTGCAATAATAGATGAACGTGCATATATGGAACTCTTCCTAGCCACAAGATGTGAATTTGGTATCGTGGGTCAGGAGTTCACCAAGATGGGATGGGGCTTTGGCTTCCCCAGGGAATCTCCTTTATCAATTGATATGTCAACTGCCATCCTTAAACTATCAGAAAACGGTAATCTCCAAAGAATTCATGACAAATGGCTGACGAGAAGTGCGTGCAGCTCAGAGGGTGCAAAACAAGGCATAGACAGACTTGAGCTAAACAGTTTTTGGGGTCTGTTCCTACTCAGTGGCATAGCATGCTTCATTGCTCTACTATGTTATGCTATTAGAATGGTTTACCGTTTTAGCAGAGACTCCAACAGTAACATTGAGCGCTCATCTCACTCTGATCGTCTCCGATCGTTCCTTTCCTTTGTGAATGAAAGAGAAGGGGAAGACATATACAGGCCAAAGAGGAGGCGAAAGGAGAAATGCTCCTGTAGAAAGGTAGTACATGAAGGTGGATCTTTGGATGACTCAACTGTTAGTGTCCACATAGAAAATAATCCCAGTGCACAAGATTAA 1914 0.4331 MQQHNTKYVHNEHKVSKEKDPAEGPFALNTFGFYAYDTVWVLASALDAFFGSGGTLSFSNDSSLNMLRGGSFELDSMGVFLDGEKLLKRILEVNRSGLTGQMMFGQDGNLVHSSYEVINVIGSGIRRIGYWSETSGLHTGESPNHSISGDGLYGVIWPGQTTQTPRGWVFSSNGKPLRIGVPLRISYREFVSRTEGTEMFGGYCIDVFTAALSLLPYSVPYKFVSFGDGKTNPLNSDLLHMITVGAFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIKKLKSSAWAFLTPFSPMMWFVTGMFFLVVGAVVWILERRINDDFRGPARRQFVTIIWFSFSTLFFAHREKTVSTLGRFVLIIWLFVVLILNSSYIASLTSILTVEQLSSPIKGIESLVISNDRIGFLRGSFAENYLTEELNIHRSRLIPLNSPSEYEKSLKDGAANGGVAAIIDERAYMELFLATRCEFGIVGQEFTKMGWGFGFPRESPLSIDMSTAILKLSENGNLQRIHDKWLTRSACSSEGAKQGIDRLELNSFWGLFLLSGIACFIALLCYAIRMVYRFSRDSNSNIERSSHSDRLRSFLSFVNEREGEDIYRPKRRRKEKCSCRKVVHEGGSLDDSTVSVHIENNPSAQD 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium408g00002 637 FunFam Glutamate receptor 288 418 - -
Vium408g00002 637 SUPERFAMILY Periplasmic binding protein-like I 17 168 IPR028082 -
Vium408g00002 637 MobiDBLite consensus disorder prediction 1 20 - -
Vium408g00002 637 FunFam Glutamate receptor 414 521 - -
Vium408g00002 637 Gene3D - 288 423 - -
Vium408g00002 637 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 20 576 IPR015683 -
Vium408g00002 637 Pfam Receptor family ligand binding region 6 122 IPR001828 -
Vium408g00002 637 SMART GluR_14 178 519 IPR001320 GO:0015276|GO:0016020
Vium408g00002 637 FunFam Glutamate receptor 172 288 - -
Vium408g00002 637 Pfam Ligand-gated ion channel 519 550 IPR001320 GO:0015276|GO:0016020
Vium408g00002 637 Gene3D - 7 112 - -
Vium408g00002 637 Gene3D - 177 287 - -
Vium408g00002 637 Pfam Bacterial extracellular solute-binding proteins, family 3 236 518 IPR001638 -
Vium408g00002 637 SUPERFAMILY Periplasmic binding protein-like II 153 519 - -
Vium408g00002 637 Gene3D - 433 524 - -
Vium408g00002 637 CDD GluR_Plant 175 517 - -
Vium408g00002 637 Gene3D - 113 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium408g00002 Vium-Chr408 30956 34596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium408g00002 26 604 Ion Channels AT1G42540 61.269 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium408g00002 K05387 - gmx:100789442 1092.03