Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4088g00002 ATGAAAGTGGAGGCACAGGAGGGGCATTTGTCTTGTCTGAGAGAGCAACCCATCCAAACCCCGGTGATCTGCTCGCGATTGTCCTTGTCCTCGTTCGCTGTGAAACCCCGCTCTCTGACCCACCCGCGGAATCCGTTCACCCGGAATCCGCCATGGAAGATGTATAACATAATATCGACGCCGGCGTCTAAGTTCCGCCAGTTCAGGCGACTCCGATCCCGACCGAAGACAACAACAGAGACAGAGGAGGAGCACGCGTTTCAAATCCTATGGCGGCACCAGATACTGGACCCCGACAGCGACATCGTGGCGTATTGGAACAAGGTGTTTCTCGTGACAAGCCTCCTCGCTCTCTTCGTCGACCCTCTCTACTTCTTCCTCCCCACAGTGGGTGGCCCCGCCTGCTTGCAGGCCGACCCCAAACTCAGCATTATCGTCACCATCATCCGCTCCTTCGCTGACCTCTTCTACGTCCTCCACATGCTCATGAAGTTCCGAACCGCCTTCGTGGCCCCCAACTCTAGAATCTTCGGCCGCGGTGAACTCGTCATGGACTCCCGCGAAATCGCCACGCGTTACCTCAGATCCGATTTCGTCATTGACCTCGCCGCCACCATCCCTCTCCCCCAGATTGTGATTTGGTTGGTGATTCCAGCGAGCAGAAACGCAAGAACTGATCATGCCAACAATACTCTTGCTCTTTTTGTACTTATTCAATATGTTCCTAGGTTGTTTCTCATCTTTCATTTGAACCAGCGTATTCAGAAAACCACTGGCGTTATTGCCAAGACTCCCTGGATTGGAGCCGCATACAATCTTATTCTCTACATGCTAGCCAGCCATGTTACAGGAGCCACTTGGTATCTATCGTCAATAGGGAGGCAATTTAACTGCTGGAAAACGCAGTGCCAAATAGAGAACAAATCACATACCCTCTCTTGCTTTTCAAGTTATCTTGATTGCAATAGTTTGAACGTCCCTGATAGGCAATACTGGCTAAACATCACCCATGTAATCACCAAATGTGACGCGAAGAGCAAAATCAACATAAAATATAAATTTGGGATGTTCGCAGAGGCTTTCCTGAACGATGTTGTCATTTCCAGTTTCAAGGAAAGATACTTCTACTGTCTTTGGTGGGGTTTGAGAAATCTAAGTTCATACGGACAGAACTTGGACACCACCACATATCTTCCAGAGACATTATTTTGCATCGTCTTATGCATTGCTGGACTGGTTCTCTTTTCGCTTTTGATTGGAAACATGGAGACGTACTTGTCATCAATGACAGTTAGACTTGAAGAATGGAGGATTCGGAAAAGAGATACCGAGGAGTGGATGAGGCATCGCCAGTTACCACCACATTTGCAGCAACGTATCCGTCGTTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTGATGAAGAAGCCATAATGCTTTCGTTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTCGTGCGGCGTGTCCCCTTTTTCTCCCAAATGGACGATCAACTTCTTGATGCAATTTGTGAACGTCTTTCATCATCACTAAGCACTGAAGGCACCTACATATTTCGAGAGGGTGATCCAGTGGATGAAATGTTGTTTATCATCAGAGGGCAATTGGAGAGTTCCACGACCAACGGAGGAAGGTCTGGATTCTTCAACTGCATCAAACTCAGGCCTGGTGACTTTTGCGGAGAGGAATTGCTGACATGGGCCCTAATGCCAAACTCAACCCTCAACCTACCTTCTTCTACTCGAACTGTCAAAGCTCTTTCTGAAGTTGAAGCTTTTTCACTACAAGCAGAGGATCTTAAATTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCAAGAAACTGCAGCATGCGTTTAGGTATTATTCCCATCAATGGAGAACATGGGGTGCTTGCTTCATACAAGCTGCTTGGAGACGATATCAGAAAAGAAAGGCAACAAGGGAGTTATCCCTGAAAGAGGGTCTCTACTACCTGTCTTTGCCTGAGACGGAAGAAAGTGGACATTTGGAGGATGATGAAACCGGGGAATCCTCAGGGAAAACGAAAAAGGTTCAGAATCTTGGTGCAACTGTCTTGGCATCAAAGTTTGCTGCCAATACAAGGAAAGGAGGACATAAACTACCCGATCCTGTTCCCCAGTTGTTCAAGCCAGACGAACCTGATTTTTCTTTAGACCATGAACTTTAG 2232 0.4727 MKVEAQEGHLSCLREQPIQTPVICSRLSLSSFAVKPRSLTHPRNPFTRNPPWKMYNIISTPASKFRQFRRLRSRPKTTTETEEEHAFQILWRHQILDPDSDIVAYWNKVFLVTSLLALFVDPLYFFLPTVGGPACLQADPKLSIIVTIIRSFADLFYVLHMLMKFRTAFVAPNSRIFGRGELVMDSREIATRYLRSDFVIDLAATIPLPQIVIWLVIPASRNARTDHANNTLALFVLIQYVPRLFLIFHLNQRIQKTTGVIAKTPWIGAAYNLILYMLASHVTGATWYLSSIGRQFNCWKTQCQIENKSHTLSCFSSYLDCNSLNVPDRQYWLNITHVITKCDAKSKINIKYKFGMFAEAFLNDVVISSFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETLFCIVLCIAGLVLFSLLIGNMETYLSSMTVRLEEWRIRKRDTEEWMRHRQLPPHLQQRIRRFVQYKWLATRGVDEEAIMLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLSSSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNCIKLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFSLQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRYQKRKATRELSLKEGLYYLSLPETEESGHLEDDETGESSGKTKKVQNLGATVLASKFAANTRKGGHKLPDPVPQLFKPDEPDFSLDHEL 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4088g00002 743 ProSiteProfiles cAMP/cGMP binding motif profile. 505 635 IPR000595 -
Vium4088g00002 743 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 79 737 - -
Vium4088g00002 743 Pfam Ion transport protein 105 432 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium4088g00002 743 Gene3D - 111 426 - -
Vium4088g00002 743 MobiDBLite consensus disorder prediction 681 701 - -
Vium4088g00002 743 SMART cnmp_10 505 636 IPR000595 -
Vium4088g00002 743 Pfam Cyclic nucleotide-binding domain 528 616 IPR000595 -
Vium4088g00002 743 MobiDBLite consensus disorder prediction 715 743 - -
Vium4088g00002 743 CDD CAP_ED 505 636 IPR000595 -
Vium4088g00002 743 Gene3D Helix hairpin bin 427 496 - -
Vium4088g00002 743 FunFam Cyclic nucleotide-gated ion channel 1 503 621 - -
Vium4088g00002 743 SUPERFAMILY cAMP-binding domain-like 435 630 IPR018490 -
Vium4088g00002 743 SUPERFAMILY Voltage-gated potassium channels 97 427 - -
Vium4088g00002 743 Gene3D Jelly Rolls 503 623 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4088g00002 Vium-Chr4088 19200 23346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4088g00002 63 742 Ion Channels AT5G14870 66.714 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4088g00002 K05391 - gmx:100802812 1282.7