Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4086g00001 ATGGATATTGTATTAAGAGGAGAAAGTCATGGTGAAAATGGCTTTCAAATTTATGGTTGTGATGTTATGAACCATGCTTTGACATCCACAGACACAGATCAATTCCTATGTGGCCACTTCCTTCATCATCAACAACAACAACAGACAAAGAACAATGATGCATGTGGTTTTTCGGAGGAGGCTTTTAAGTGGACAAACATCAACCAAAACCTTACACTGTGTCTGGATGATATGCAATGTAAGAACACAAAAGTGGTGGGAAGGAGAAGGAAGAAACAATCTTCTGTGTCTTGGATCAAAGGACAGTGGAATAAGGAAGAGGACAGGAAACTGATAAGGTTGGTGAAACAACATGGTGATAAAAAGTGGTCTGAAATAGCTGAGAAGTTGGAGGGAAGAGTTGGCAAACAATGTCGAGAAAGATGGAACAATCATTTGCGTCCTGATATTAAGAAAGATAGCTGGAGCGAAGAAGAAGAAAGAATACTGGTAGACATGCATACGAGGCTTGGAAATCGTTGGTGCGAGATGGCGAAATGCCTTCCAGGAAGATCAGAGAATGCCATAAAGAACCACTGGAATGCGACGAAAAGGAGACAGAATTCAAAGAGAAAGCACAAGAAAACAAAGACCTCTAATGGAAAACCTCATTCCTCCATACTCGAAGACTACATCAGAAGCAAGACCATCATCACCACAAACTCTACACCTCTTACTGCCCCAACACCCTCACAGGACAACAATGCACACAACCCTTTCAACCATCTCTTCTATCAACCTTTTCCTAACGAACCACTCTTCATGCAACAAATTTTCACGGAGAATGTCGAAGCCTCTAAGCAGTCTAAGATGATGTCTCCAACCTCATATTTGGATCACTGGAACATGATGAATGTTGATGATGTTGATGAGAGTGAGGTTGTGTATTCTCTGCAATACCCAGATAATATGCACTTCAATGATAGTTTCTTCCCCAGAGAGACCCATCCCCCAGCTACTTACCTTCCTTCGGATTTTTATGTCTCTCCCTTGTTCAACGTAGCATCTGGGTATGGAAATCAGAATCTCAACATGGATTTTCGGCATCAAGGTGCCTCACAAGTAAAAGGAGAGGAGATCTGGTAG 1125 0.4187 MDIVLRGESHGENGFQIYGCDVMNHALTSTDTDQFLCGHFLHHQQQQQTKNNDACGFSEEAFKWTNINQNLTLCLDDMQCKNTKVVGRRRKKQSSVSWIKGQWNKEEDRKLIRLVKQHGDKKWSEIAEKLEGRVGKQCRERWNNHLRPDIKKDSWSEEEERILVDMHTRLGNRWCEMAKCLPGRSENAIKNHWNATKRRQNSKRKHKKTKTSNGKPHSSILEDYIRSKTIITTNSTPLTAPTPSQDNNAHNPFNHLFYQPFPNEPLFMQQIFTENVEASKQSKMMSPTSYLDHWNMMNVDDVDESEVVYSLQYPDNMHFNDSFFPRETHPPATYLPSDFYVSPLFNVASGYGNQNLNMDFRHQGASQVKGEEIW 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4086g00001 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 151 201 IPR017930 -
Vium4086g00001 374 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 150 IPR017930 -
Vium4086g00001 374 CDD SANT 154 197 IPR001005 -
Vium4086g00001 374 PANTHER MYB PROTEIN-RELATED 92 214 - -
Vium4086g00001 374 Pfam Myb-like DNA-binding domain 103 160 - -
Vium4086g00001 374 FunFam Transcriptional activator Myb isoform A 99 152 - -
Vium4086g00001 374 Gene3D - 153 220 - -
Vium4086g00001 374 CDD SANT 103 146 IPR001005 -
Vium4086g00001 374 ProSiteProfiles Myb-like domain profile. 147 197 IPR001005 -
Vium4086g00001 374 ProSiteProfiles Myb-like domain profile. 100 146 IPR001005 -
Vium4086g00001 374 Gene3D - 99 151 - -
Vium4086g00001 374 MobiDBLite consensus disorder prediction 195 218 - -
Vium4086g00001 374 MobiDBLite consensus disorder prediction 196 213 - -
Vium4086g00001 374 SUPERFAMILY Homeodomain-like 97 193 IPR009057 -
Vium4086g00001 374 SMART sant 151 199 IPR001005 -
Vium4086g00001 374 SMART sant 99 148 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4086g00001 Vium-Chr4086 19309 22945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4086g00001 77 346 MYB Transcription Factor Family AT5G11050 42.517 4.33e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium4086g00001 Myb_DNA-bind_6 1.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4086g00001 K09422 - vra:106763407 559.296