Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4078g00002 ATGGCGGAAACCGACCCTTCCTGGGTGCTCCGCAACCTCACCCGCGTTTCCACCCAAATCTCGTACCTCTCCTCCTTCAAGCCAATCATCAGGACCCAATGCTGCGACCTCGCTCGCCGCATACGCTTCCTCGCTCCTCTCTTCCTCGAATTGCATGACAACGTTGAGTTGACGGGTGCCGTTTCCTTCCACGCACTTCAGGAAGCGCTCTTCAAGGCCAGGGATTTGCTCCAATTCGCCACCACTACAAGCCAGGTTTTCATGATACTGGACAGAGAGCAAGTTAAACACAGGTTCACAGATGTTGCTGTTCGTTTTGAACATGCCATGAGGAAGATCTCCTTTGATGAGCTTGATGTTTCTGAAGAAATCAAGGAACAGGTTGCACTTGTGACCACTCAGTTTAGAAGAGCTAAAGAGCAGTTTGATCCACTGGGTCTTCAGCTTTATGAACAACTTTTGTCTGTGTACAACCAGAGCTATGATGTGAAGACTGAAACTGCTGAACTACGTTCAATCTGTGAAAAGCTACAATTTATCAATGTGGATGATGTCAAGCAAGAGTCACTTGCTCTAGAAAAGATGGGCGGAGAGAGGTGGGATCATTCTCAGAAAAGGATACAGGATATGTCGTTGGTTGTGCTGAAAAAAATCCAAGATTTCTTAATGGTGGAATCAGGAAACATTATTGTGTCACCAAGTGAGAATATATCTCGACATACTGATGAGTCATATGTGAAATCATGTACGCAATCACTGGTTATACCTGATGAGTTTCGCTGTCCAATATCTCTAGAGTTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATACGAACGATCTTGTATAAAGAAATGGCTTGAAGCAGGGCATGGAACTTGTCCCAAGACTCAGCAGATTCTTTCCACTCCCATCCTCATACCCAACCATGCTTTATATGGCCTGATATCAAGTTGGTGTGAGGCAAATGGAGTGGAACCACCTAAAAGGTTAGGGAATTTATGGCTCTGTAAGACAACATCGGATGGATCTTCTGAATTAGTGGATCTTGATATCTTAGTGAGCAAACTTTCTTCCAGAGGTATTGAGGATCGACGAAATGCTGTAGGGGAGGTCCGACTTCTTGCCAAGCAAAATAGTCAAAATAGAATGCTGATTGCCGAAGCTGGTGCTATACCTCGCCTTGTTGGTCTCCTCTACACACCTGATGCTGGCATCCAAGAGCATGCAGTTACTGCTCTTCTGAACTTGTCTATCTATGCGGACAATAAAGAGCGTATCATGGCTTCTGAGGCTGTGCCAGGCATCCTTCATGTGCTAGAAAATGGTAGTATGGCAGCCCGAGAAAATGCAGCAGCCACCTTTTTCAGCCTTTCTGCGGTGGATGAGAACAGAGTAGCAATTGGTGCATCTGGAGCAATCCAGGCATTAGTTACTCTATTTTGCGAGGGAAGTACAAGAGGGAAGTTGGATGCTGCAAAAGCACTTTTCAATCTGTGTTTATCTCAAGGAAATAAAGGACGGGCAATTAGGGCTGGTATTGGGCCCAAGTTGATAGAAATGCTAATAGAACCTGATGGGGCAATGCGGGACGAAGCATTGGCAATAATGGCTATAATAGCTGGTCATCCCGATGGAAAAGCAGCAATTGGATCTTTGAATGTTGTATCCACTTTGGTGGAATTAGTCAGCAATGGATCTCCCAGGAACAAAGAGAATGCAACTTCAGTGTTGGTTCTCCTCTGTCATGGAGATCCTCTAAACTTGTCAATTGTCAATTCGCCTAGGGTGATCAATATTCTCTCGGACTTGAAAGAAAAAGGTTCAGAAAGGGCCAGGCGGAAAGCTGGCCAGCTTCTTGAGTTAATAGGAAATCATTGTGAACATACTATGAAAACTTCTAACTAG 1914 0.4483 MAETDPSWVLRNLTRVSTQISYLSSFKPIIRTQCCDLARRIRFLAPLFLELHDNVELTGAVSFHALQEALFKARDLLQFATTTSQVFMILDREQVKHRFTDVAVRFEHAMRKISFDELDVSEEIKEQVALVTTQFRRAKEQFDPLGLQLYEQLLSVYNQSYDVKTETAELRSICEKLQFINVDDVKQESLALEKMGGERWDHSQKRIQDMSLVVLKKIQDFLMVESGNIIVSPSENISRHTDESYVKSCTQSLVIPDEFRCPISLELMKDPVIICTGQTYERSCIKKWLEAGHGTCPKTQQILSTPILIPNHALYGLISSWCEANGVEPPKRLGNLWLCKTTSDGSSELVDLDILVSKLSSRGIEDRRNAVGEVRLLAKQNSQNRMLIAEAGAIPRLVGLLYTPDAGIQEHAVTALLNLSIYADNKERIMASEAVPGILHVLENGSMAARENAAATFFSLSAVDENRVAIGASGAIQALVTLFCEGSTRGKLDAAKALFNLCLSQGNKGRAIRAGIGPKLIEMLIEPDGAMRDEALAIMAIIAGHPDGKAAIGSLNVVSTLVELVSNGSPRNKENATSVLVLLCHGDPLNLSIVNSPRVINILSDLKEKGSERARRKAGQLLELIGNHCEHTMKTSN 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4078g00002 637 FunFam RING-type E3 ubiquitin transferase 254 328 - -
Vium4078g00002 637 CDD RING-Ubox_PUB 256 308 IPR045210 -
Vium4078g00002 637 PANTHER U BOX DOMAIN-CONTAINING 31 625 - -
Vium4078g00002 637 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 392 434 IPR000225 GO:0005515
Vium4078g00002 637 Gene3D - 16 116 IPR036537 GO:0007166
Vium4078g00002 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Vium4078g00002 637 SMART arm_5 504 544 IPR000225 GO:0005515
Vium4078g00002 637 SMART arm_5 545 585 IPR000225 GO:0005515
Vium4078g00002 637 SMART arm_5 463 503 IPR000225 GO:0005515
Vium4078g00002 637 SMART arm_5 381 421 IPR000225 GO:0005515
Vium4078g00002 637 SUPERFAMILY RING/U-box 255 331 - -
Vium4078g00002 637 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Vium4078g00002 637 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Vium4078g00002 637 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Vium4078g00002 637 FunFam RING-type E3 ubiquitin transferase 338 631 - -
Vium4078g00002 637 SUPERFAMILY ARM repeat 351 625 IPR016024 -
Vium4078g00002 637 Gene3D - 350 625 IPR011989 -
Vium4078g00002 637 Pfam Armadillo/beta-catenin-like repeat 381 420 IPR000225 GO:0005515
Vium4078g00002 637 Pfam Armadillo/beta-catenin-like repeat 464 502 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4078g00002 Vium-Chr4078 28036 50158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4078g00002 3 636 U-box Gene Family AT3G46510 47.179 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4078g00002 - - tpra:123888033 749.584