Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4078g00001 ATGGCGGAAACCGACCCTTCCTGGGTGCTCCGCAACCTCACCCGCGTTTCCACCCAAATCTCGTACCTCTCCTCCTTCAAGCCAATCATCAGGACCCAATGCTGCGACCTCGCTCGCCGCATACGCTTCCTCGCTCCTCTCTTCCTCGAATTGCATGACAACGTTGAGTTGACGGGTGCCGTTTCCTTCCACGCACTTCAGGAAGCGCTCTTCAAGGCCAGGGATTTGCTCCAATTCGCCACCACTACAAGCCAGGTTTTCATGATACTGGACAGAGAGCAAGTTAAACACAGGTTCACAGATGTTGCTGTTCGTTTTGAACATGCCATGAGGAAGATCTCCTTTGATGAGCTTGATGTTTCTGAAGAAATCAAGGAACAGGTTGCACTTGTGACCACTCAGTTTAGAAGAGCTAAAGAGCAGTTTGATCCACTGGGTCTTCAGCTTTATGAACAACTTTTGTCTGTGTACAACCAGAGCTATGATGTGAAGACTGAAACTGCTGAACTACGTTCAATCTGTGAAAAGCTACAATTTATCAATGTGGATGATGTCAAGCAAGAGTCACTTGCTCTAGAAAAGATGGGCGGAGAGAGGTGGGATCATTCTCAGAAAAGGATACAGGATATGTCGTTGGTTGTGCTGAAAAAAATCCAAGATTTCTTAATGGTGGAATCAGGAAACATTATTGTGTCACCAAGTGAGAATATATCTCGACATACTGATGAGTCATATGTGAAATCATGTACGCAATCACTGGTTATACCTGATGAGTTTCGCTGTCCAATATCTCTAGAGTTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATACGAACGATCTTGTATAAAGAAATGGCTTGAAGCAGGGCATGGAACTTGTCCCAAGACTCAGCAGATTCTTTCCACTCCCATCCTCATACCCAACCATGCTTTATATGGCCTGATATCAAGTTGGTGTGAGGCAAATGGAGTGGAACCACCTAAAAGGTTAGGGAATTTATGGCTCTGTAAGACAACATCGGATGGATCTTCTGAATTAGTGGATCTTGATATCTTAGTGAGCAAACTTTCTTCCAGAGGGGAGGTCCGACTTCTTGCCAAGCAAAATAGTCAAAATAGAATGCTGATTGCCGAAGCTGGTGCTATACCTCGCCTTGTTGGTCTCCTCTACACACCTGATGCTGGCATCCAAGAGCATGCAGTTACTGCTCTTCTGAACTTGTCTATCTATGCGGACAATAAAGAGCGTATCATGGCTTCTGAGGCTGTGCCAGGCATCCTTCATGTGCTAGAAAATGGTAGTATGGCAGCCCGAGAAAATGCAGCAGCCACCTTTTTCAGCCTTTCTGCGGTGGATGAGAACAGAGTAGCAATTGGTGCATCTGGAGCAATCCAGGCATTAGTTACTCTATTTTGCGAGGGAAGTACAAGAGGGAAGTTGGATGCTGCAAAAGCACTTTTCAATCTGTGTTTATCTCAAGGAAATAAAGGACGGGCAATTAGGGCTGGTATTGGGCCCAAGTTGATAGAAATGCTAATAGAACCTGATGGGGCAATGCGGGACGAAGCATTGGCAATAATGGCTATAATAGCTGGTCATCCCGATGGAAAAGCAGCAATTGGATCTTTGAATGTTGTATCCACTTTGGTGGAATTAGTCAGCAATGGATCTCCCAGGAACAAAGAGAATGCAACTTCAGTGTTGGTTCTCCTCTGTCATGGAGATCCTCTAAACTTGTCAATTGTCAATTCGCCTAGGGTGATCAATATTCTCTCGGACTTGAAAGAAAAAGGTTCAGAAAGGGCCAGGCGGAAAGCTGGCCAGCTTCTTGAGTTAATAGGAAATCATTGTGAACATACTATGAAAACTTCTAACTAG 1887 0.4483 MAETDPSWVLRNLTRVSTQISYLSSFKPIIRTQCCDLARRIRFLAPLFLELHDNVELTGAVSFHALQEALFKARDLLQFATTTSQVFMILDREQVKHRFTDVAVRFEHAMRKISFDELDVSEEIKEQVALVTTQFRRAKEQFDPLGLQLYEQLLSVYNQSYDVKTETAELRSICEKLQFINVDDVKQESLALEKMGGERWDHSQKRIQDMSLVVLKKIQDFLMVESGNIIVSPSENISRHTDESYVKSCTQSLVIPDEFRCPISLELMKDPVIICTGQTYERSCIKKWLEAGHGTCPKTQQILSTPILIPNHALYGLISSWCEANGVEPPKRLGNLWLCKTTSDGSSELVDLDILVSKLSSRGEVRLLAKQNSQNRMLIAEAGAIPRLVGLLYTPDAGIQEHAVTALLNLSIYADNKERIMASEAVPGILHVLENGSMAARENAAATFFSLSAVDENRVAIGASGAIQALVTLFCEGSTRGKLDAAKALFNLCLSQGNKGRAIRAGIGPKLIEMLIEPDGAMRDEALAIMAIIAGHPDGKAAIGSLNVVSTLVELVSNGSPRNKENATSVLVLLCHGDPLNLSIVNSPRVINILSDLKEKGSERARRKAGQLLELIGNHCEHTMKTSN 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4078g00001 628 Gene3D - 346 482 IPR011989 -
Vium4078g00001 628 PANTHER U BOX DOMAIN-CONTAINING 31 616 - -
Vium4078g00001 628 SUPERFAMILY ARM repeat 365 616 IPR016024 -
Vium4078g00001 628 FunFam RING-type E3 ubiquitin transferase 254 328 - -
Vium4078g00001 628 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Vium4078g00001 628 Gene3D - 16 116 IPR036537 GO:0007166
Vium4078g00001 628 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 383 425 IPR000225 GO:0005515
Vium4078g00001 628 CDD RING-Ubox_PUB 256 308 IPR045210 -
Vium4078g00001 628 Pfam Armadillo/beta-catenin-like repeat 455 493 IPR000225 GO:0005515
Vium4078g00001 628 Pfam Armadillo/beta-catenin-like repeat 372 411 IPR000225 GO:0005515
Vium4078g00001 628 Coils Coil 624 628 - -
Vium4078g00001 628 FunFam RING-type E3 ubiquitin transferase 351 622 - -
Vium4078g00001 628 SUPERFAMILY RING/U-box 255 331 - -
Vium4078g00001 628 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Vium4078g00001 628 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Vium4078g00001 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Vium4078g00001 628 SMART arm_5 536 576 IPR000225 GO:0005515
Vium4078g00001 628 SMART arm_5 454 494 IPR000225 GO:0005515
Vium4078g00001 628 SMART arm_5 495 535 IPR000225 GO:0005515
Vium4078g00001 628 SMART arm_5 372 412 IPR000225 GO:0005515
Vium4078g00001 628 Gene3D - 483 625 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4078g00001 Vium-Chr4078 28036 50159 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4078g00001 3 627 U-box Gene Family AT3G46510 46.708 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4078g00001 - - tpra:123888033 733.021