LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium4078g00001	ATGGCGGAAACCGACCCTTCCTGGGTGCTCCGCAACCTCACCCGCGTTTCCACCCAAATCTCGTACCTCTCCTCCTTCAAGCCAATCATCAGGACCCAATGCTGCGACCTCGCTCGCCGCATACGCTTCCTCGCTCCTCTCTTCCTCGAATTGCATGACAACGTTGAGTTGACGGGTGCCGTTTCCTTCCACGCACTTCAGGAAGCGCTCTTCAAGGCCAGGGATTTGCTCCAATTCGCCACCACTACAAGCCAGGTTTTCATGATACTGGACAGAGAGCAAGTTAAACACAGGTTCACAGATGTTGCTGTTCGTTTTGAACATGCCATGAGGAAGATCTCCTTTGATGAGCTTGATGTTTCTGAAGAAATCAAGGAACAGGTTGCACTTGTGACCACTCAGTTTAGAAGAGCTAAAGAGCAGTTTGATCCACTGGGTCTTCAGCTTTATGAACAACTTTTGTCTGTGTACAACCAGAGCTATGATGTGAAGACTGAAACTGCTGAACTACGTTCAATCTGTGAAAAGCTACAATTTATCAATGTGGATGATGTCAAGCAAGAGTCACTTGCTCTAGAAAAGATGGGCGGAGAGAGGTGGGATCATTCTCAGAAAAGGATACAGGATATGTCGTTGGTTGTGCTGAAAAAAATCCAAGATTTCTTAATGGTGGAATCAGGAAACATTATTGTGTCACCAAGTGAGAATATATCTCGACATACTGATGAGTCATATGTGAAATCATGTACGCAATCACTGGTTATACCTGATGAGTTTCGCTGTCCAATATCTCTAGAGTTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACATACGAACGATCTTGTATAAAGAAATGGCTTGAAGCAGGGCATGGAACTTGTCCCAAGACTCAGCAGATTCTTTCCACTCCCATCCTCATACCCAACCATGCTTTATATGGCCTGATATCAAGTTGGTGTGAGGCAAATGGAGTGGAACCACCTAAAAGGTTAGGGAATTTATGGCTCTGTAAGACAACATCGGATGGATCTTCTGAATTAGTGGATCTTGATATCTTAGTGAGCAAACTTTCTTCCAGAGGGGAGGTCCGACTTCTTGCCAAGCAAAATAGTCAAAATAGAATGCTGATTGCCGAAGCTGGTGCTATACCTCGCCTTGTTGGTCTCCTCTACACACCTGATGCTGGCATCCAAGAGCATGCAGTTACTGCTCTTCTGAACTTGTCTATCTATGCGGACAATAAAGAGCGTATCATGGCTTCTGAGGCTGTGCCAGGCATCCTTCATGTGCTAGAAAATGGTAGTATGGCAGCCCGAGAAAATGCAGCAGCCACCTTTTTCAGCCTTTCTGCGGTGGATGAGAACAGAGTAGCAATTGGTGCATCTGGAGCAATCCAGGCATTAGTTACTCTATTTTGCGAGGGAAGTACAAGAGGGAAGTTGGATGCTGCAAAAGCACTTTTCAATCTGTGTTTATCTCAAGGAAATAAAGGACGGGCAATTAGGGCTGGTATTGGGCCCAAGTTGATAGAAATGCTAATAGAACCTGATGGGGCAATGCGGGACGAAGCATTGGCAATAATGGCTATAATAGCTGGTCATCCCGATGGAAAAGCAGCAATTGGATCTTTGAATGTTGTATCCACTTTGGTGGAATTAGTCAGCAATGGATCTCCCAGGAACAAAGAGAATGCAACTTCAGTGTTGGTTCTCCTCTGTCATGGAGATCCTCTAAACTTGTCAATTGTCAATTCGCCTAGGGTGATCAATATTCTCTCGGACTTGAAAGAAAAAGGTTCAGAAAGGGCCAGGCGGAAAGCTGGCCAGCTTCTTGAGTTAATAGGAAATCATTGTGAACATACTATGAAAACTTCTAACTAG	1887	0.4483	MAETDPSWVLRNLTRVSTQISYLSSFKPIIRTQCCDLARRIRFLAPLFLELHDNVELTGAVSFHALQEALFKARDLLQFATTTSQVFMILDREQVKHRFTDVAVRFEHAMRKISFDELDVSEEIKEQVALVTTQFRRAKEQFDPLGLQLYEQLLSVYNQSYDVKTETAELRSICEKLQFINVDDVKQESLALEKMGGERWDHSQKRIQDMSLVVLKKIQDFLMVESGNIIVSPSENISRHTDESYVKSCTQSLVIPDEFRCPISLELMKDPVIICTGQTYERSCIKKWLEAGHGTCPKTQQILSTPILIPNHALYGLISSWCEANGVEPPKRLGNLWLCKTTSDGSSELVDLDILVSKLSSRGEVRLLAKQNSQNRMLIAEAGAIPRLVGLLYTPDAGIQEHAVTALLNLSIYADNKERIMASEAVPGILHVLENGSMAARENAAATFFSLSAVDENRVAIGASGAIQALVTLFCEGSTRGKLDAAKALFNLCLSQGNKGRAIRAGIGPKLIEMLIEPDGAMRDEALAIMAIIAGHPDGKAAIGSLNVVSTLVELVSNGSPRNKENATSVLVLLCHGDPLNLSIVNSPRVINILSDLKEKGSERARRKAGQLLELIGNHCEHTMKTSN	628

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium4078g00001	628	Gene3D	-	346	482	IPR011989	-
	Vium4078g00001	628	PANTHER	U BOX DOMAIN-CONTAINING	31	616	-	-
	Vium4078g00001	628	SUPERFAMILY	ARM repeat	365	616	IPR016024	-
	Vium4078g00001	628	FunFam	RING-type E3 ubiquitin transferase	254	328	-	-
	Vium4078g00001	628	Pfam	U-box domain	255	325	IPR003613	GO:0004842\|GO:0016567
	Vium4078g00001	628	Gene3D	-	16	116	IPR036537	GO:0007166
	Vium4078g00001	628	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	383	425	IPR000225	GO:0005515
	Vium4078g00001	628	CDD	RING-Ubox_PUB	256	308	IPR045210	-
	Vium4078g00001	628	Pfam	Armadillo/beta-catenin-like repeat	455	493	IPR000225	GO:0005515
	Vium4078g00001	628	Pfam	Armadillo/beta-catenin-like repeat	372	411	IPR000225	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium4078g00001	Vium-Chr4078	28036	50159	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium4078g00001	3	627	U-box Gene Family	AT3G46510	46.708	0.0	572

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium4078g00001	-		-	tpra:123888033	733.021

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