Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4075g00002 ATGAAGGATCCAGAGGAGCACCAAGTGAAGTCTAGAAGGCCTCTTCCAAAACCCACAGAACGTAGAAGAAGGTGCAGGAGAAGGAGCCAGTGCAAGCCAGAGAAATTACAAGAAACAGAACTTCATCCACAGCTTCCTTCCTCTGCCACTTCCAAGAGTCTTATGTTTCATCAAAGGCCTGGCTATGGTCAACTCGGGACCAAGTGTCTCGTCAAAGCTAACCACTTCCTTGCTGATATATCTGCATCTGACTTGAGCCATTACAATGTTAAAATAACACCTGAAGTCACTTCTCGAAAAACAAGCAAGACTATCGTAGCAGAGTTGGTGAGGGTTCACAGGAACACTGACTTAGCCACGAGGCTCCCTGTGTATGATGGAGGAAGAAACCTTTACACTGCTGGTTTGCTTCCTTTTACATACAAAGAATTCAATGTAACGTTGAGTGAGGATGATGATGCCACTAGTGGTACCAGGGAAAGAAAGTTTAAGGTGGTAATCAAGTTCGCAACTCATGTTAGCATGCATCAGCTACGTGACCTTCTCAGTGGAAAGCAAGTGGACAATCCACAGGAAGCTCTAACGGTCTTTGATATTGTGTTAAGGGAGCTTGCGGCTCAGAGTTACGTGTCAATTGGGAGGTTTCTTTATTCTCCGGATGTAAGAAAACCACAGCAGTTGGGTGGTGGCCTTGAATCGTGGAGGGGCTTCTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCACTTAACATTGATATGTCATCAATGGCTTTTATTGAACCACTACCTGTGATTGATTTTGTTGCTCAAATTTTGGGAAAAGATGTGCACTCAAAGCCTTTGTCGGATGCTGATCGTGTCAAGATAAAAAAGGCTCTAAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAATTTTCGAAGGAAGTATAGAATATCAGGACTGACTTCACAGCCTACAAGGGAGCTTATTTTCCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTAGATTATTTTCAAGAAATGTATGGATTTACAATAAAATATTCTCATCTACCTTGCCTTCAAGTAGGAAGCCAAAGGAAGGTCAACTATTTGCCCATGGAGGCATGCAAAATAGTTGAGGGCCAGAGATATACAAAAGGGTTAAATGAAAAGCAGATAACTTCTCTGCTGAAGTTCTCATGCCAGAGACCCCGAGAACAAGAGGCAGACATTTTACAGACAATGCAACAAAACAACTACGACAATAATCCATATGCAAAAGAGTTTGGCATCAGCATAGATAACAAGCTTGCATCTGTTGAGGCTCGGGTTCTTCCACCTCCTTGGTTGAAATATCACGACACTGGAAGAGAAAAAGAATACTTGCCACAAGTTGGTCAGTGGAACATGATGAACAAGAAAGTAATAAATGGAAGTACTGTAAGATATTGGGCATGTATCAATTTCTCTCGAAGTGTACAGGAAAGTACAGCTCGTGGATTTTGTCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTCAGTCAGGACCCTGTGATTCCTATATATTCTGCAAGACCAGATCAGGTAAAGAAGGCTTTGAATTATGTACACTCTGCTGCTATGGATAAGCTTTGTGGGAAAGAGCTAGAGTTACTGATTGCCATTCTTCCAGACAATAATGGCTCTCTGTACGGTGATCTCAAAAGGATTTGCGAAACAGATCTGGGGTTGATCTCTCAATGCTGCCTTACGAAACATGTATTCAAGATCAATAGACAATACCTTGCAAATGTGGCACTTAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTGCTTTTGGATGCTTTAAGTTGGAGGATTCCACTGGTCAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACTCATCCGGAATCAGGAGAGGATTCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCTGAAGTAACAAAGTATGCAGGGTTGGTCTGTGCTCAGCCTCATCGAGAAGAGCTTATTCAAGATCTTTTCAGATCTTGGAAAGATCCACAGAGGGGTGTAACATATGGTGGTATGATCAGGGAGCTTTTACTATCATTCAAGAAGGCAACGGGACAAAAACCATTGAGAATAATCTTCTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGCTATATGAGCTTGATGCCATCCGCAAGGCTTGTGCATCTTTGGAACCTAGTTACCAGCCACCAGTAACATTTGTAGTAGTTCAAAAGCGGCATCACACTAGACTCTTTGCAAACAATCACGATGACAGAAATAGTACTGATAAGAGTGGAAATATCTTACCTGGAACTGTGGTAGATTCTAAGATCTGCCATCCTTCTGAATTCGACTTCTACTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCACACTATCATGTCCTCTGGGACGAGAACAATTTCACTGCAGACGAGATTCAGTCTCTTACCAACAATTTATGCTACACTTATGCAAGATGTACACGGTCTGTTTCTTGCCTCCCGCATACTATGCTCATCTAG 2583 0.4239 MKDPEEHQVKSRRPLPKPTERRRRCRRRSQCKPEKLQETELHPQLPSSATSKSLMFHQRPGYGQLGTKCLVKANHFLADISASDLSHYNVKITPEVTSRKTSKTIVAELVRVHRNTDLATRLPVYDGGRNLYTAGLLPFTYKEFNVTLSEDDDATSGTRERKFKVVIKFATHVSMHQLRDLLSGKQVDNPQEALTVFDIVLRELAAQSYVSIGRFLYSPDVRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGNFRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFQEMYGFTIKYSHLPCLQVGSQRKVNYLPMEACKIVEGQRYTKGLNEKQITSLLKFSCQRPREQEADILQTMQQNNYDNNPYAKEFGISIDNKLASVEARVLPPPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVIPIYSARPDQVKKALNYVHSAAMDKLCGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFRSWKDPQRGVTYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFANNHDDRNSTDKSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSCLPHTMLI 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4075g00002 860 SMART PAZ_2_a_3 267 399 IPR003100 GO:0005515
Vium4075g00002 860 Gene3D - 620 859 IPR036397 GO:0003676
Vium4075g00002 860 MobiDBLite consensus disorder prediction 1 15 - -
Vium4075g00002 860 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 52 855 - -
Vium4075g00002 860 SMART Piwi_a_2 551 856 IPR003165 GO:0003676
Vium4075g00002 860 Pfam N-terminal domain of argonaute 68 201 IPR032474 -
Vium4075g00002 860 Pfam Argonaute linker 2 domain 405 449 IPR032472 -
Vium4075g00002 860 SUPERFAMILY Ribonuclease H-like 540 857 IPR012337 -
Vium4075g00002 860 Pfam Argonaute linker 1 domain 211 260 IPR014811 -
Vium4075g00002 860 CDD PAZ_argonaute_like 262 376 - -
Vium4075g00002 860 SUPERFAMILY PAZ domain 258 418 IPR036085 GO:0005515
Vium4075g00002 860 MobiDBLite consensus disorder prediction 16 30 - -
Vium4075g00002 860 Pfam Piwi domain 552 852 IPR003165 GO:0003676
Vium4075g00002 860 Pfam PAZ domain 267 393 IPR003100 GO:0005515
Vium4075g00002 860 MobiDBLite consensus disorder prediction 1 47 - -
Vium4075g00002 860 Gene3D - 441 614 - -
Vium4075g00002 860 FunFam protein argonaute 10-like 620 859 - -
Vium4075g00002 860 FunFam Protein argonaute-2 256 382 - -
Vium4075g00002 860 ProSiteProfiles PAZ domain profile. 263 377 IPR003100 GO:0005515
Vium4075g00002 860 SMART DUF1785_2 210 262 IPR014811 -
Vium4075g00002 860 ProSiteProfiles Piwi domain profile. 551 860 IPR003165 GO:0003676
Vium4075g00002 860 FunFam Argonaute 10 441 614 - -
Vium4075g00002 860 Gene3D paz domain 257 381 - -
Vium4075g00002 860 CDD Piwi_ago-like 421 852 IPR045246 -
Vium4075g00002 860 Pfam Mid domain of argonaute 460 537 IPR032473 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4075g00002 Vium-Chr4075 5680 18374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4075g00002 52 855 Eukaryotic Initiation Factors Gene Family AT5G43810 75.682 0.0 1325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4075g00002 K11593 - gmx:100810235 1626.68