Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4072g00003 ATGGCCAAAAGATCACACTCACAGCTTCGAACCCAGAAAAACAATGCGACCAACATTGCCAATAATCTTAATGCAACCAACACTGTCCCCACCAAGGTCAAACGAACAAGGAGAAGTGTCCCCAGAGACTCCCCTCCTCAACGCAGCTCCATATACCGAGGAGTCACTAGGCACCGATGGACTGGTCGCTACGAAGCTCATTTATGGGACAAGCATTGCTGGAATGAAACACAGAACAAAAAAGGACGACAAGTTTACCTTGGTGCTTATGACAATGAAGTGGCAGCAGCACATGCTTATGATCTAGCTGCACTAAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCAAACTATCTGAACGAACTGAAAGAAATGGAGGGTCAATCACGGGAGGAGTATATTGGATCTCTGAGGAGGAAAAGCAGTGGTTTCTCTCGAGGGATTTCTAAATACAGAGGGGTTGCAAGACATCATCACAATGGACGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTGGGAACTTACGCTACCCAAGAAGAAGCTGCTACGGCCTATGACCTGGCAGCTATAGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGTTACATCAAGTGGCTTAAGCCTAATAACAACACCAACAATAATGACCAGATTAGCATTAATCTCAATGACATGAATAACAATTGCACCAGCAGCAACTTCACCCCAAACCCTGATCAAGAACAAGAGCAAGAACTAAGCTTCCTCCACAACCAGGATTCAGTGAATACTGTTGTAGAAGAAGCCACATCGGTGACACATCAGCCCCGTGCATCAGGTGCCACGTCAGCATTGGAGCTTCTGCTTCAGTCATCAAAGTTCAAGGAAATGATGGAGATGACATCTGTGGCCAATATGTCGACACAGATGGAGTCTGAGTTGCCACAGTGTGCGTTTCCTGATCACATTCAAACGTACTTTGAGTATGAAGATTCCAACAGATATGAGGAAGTGGATGATCTCATGTTCAAGTTCAACGAGTTCAGCTCCATTGTGCCGTTTTACCACTGTGACGAGTTCCAGAGTTGA 1107 0.4508 MAKRSHSQLRTQKNNATNIANNLNATNTVPTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNETQNKKGRQVYLGAYDNEVAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMEGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNNTNNNDQISINLNDMNNNCTSSNFTPNPDQEQEQELSFLHNQDSVNTVVEEATSVTHQPRASGATSALELLLQSSKFKEMMEMTSVANMSTQMESELPQCAFPDHIQTYFEYEDSNRYEEVDDLMFKFNEFSSIVPFYHCDEFQS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4072g00003 368 ProSiteProfiles AP2/ERF domain profile. 51 117 IPR001471 GO:0003700|GO:0006355
Vium4072g00003 368 SUPERFAMILY DNA-binding domain 50 119 IPR016177 GO:0003677
Vium4072g00003 368 FunFam AP2-like ethylene-responsive transcription factor 50 119 - -
Vium4072g00003 368 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 18 282 - -
Vium4072g00003 368 ProSiteProfiles AP2/ERF domain profile. 153 211 IPR001471 GO:0003700|GO:0006355
Vium4072g00003 368 SMART rav1_2 153 217 IPR001471 GO:0003700|GO:0006355
Vium4072g00003 368 SMART rav1_2 51 123 IPR001471 GO:0003700|GO:0006355
Vium4072g00003 368 Pfam AP2 domain 51 109 IPR001471 GO:0003700|GO:0006355
Vium4072g00003 368 Pfam AP2 domain 152 203 IPR001471 GO:0003700|GO:0006355
Vium4072g00003 368 CDD AP2 152 213 IPR001471 GO:0003700|GO:0006355
Vium4072g00003 368 PRINTS Ethylene responsive element binding protein signature 193 213 IPR001471 GO:0003700|GO:0006355
Vium4072g00003 368 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Vium4072g00003 368 FunFam AP2-like ethylene-responsive transcription factor 152 213 - -
Vium4072g00003 368 SUPERFAMILY DNA-binding domain 152 213 IPR016177 GO:0003677
Vium4072g00003 368 Gene3D AP2/ERF domain 51 119 IPR036955 GO:0003700|GO:0006355
Vium4072g00003 368 Gene3D AP2/ERF domain 152 213 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4072g00003 Vium-Chr4072 47205 49864 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4072g00003 47 215 AP2-EREBP Transcription Factor Family AT5G57390 73.373 3.37e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium4072g00003 AP2 5.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4072g00003 K09285 - gmx:100793339 634.024