Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4072g00001 ATGGCTCTGCTCTTCCTCTTTCTCCTCCTCTTCCTCTCTCTTTCCTCTGCTTCTCAGCCTCGCAATCCCGAAGTGGAGGCTTTGATGAACATAAAAGCAGCTCTCAATGATCCTCACGGCGTCTTGAATAACTGGGATGAATACTCCGTCGACGCTTGCAGTTGGGCCATGATCACCTGCTCTTCTGATGACCTTGTCATAGGCCTAGGTGCGCCTAGCCAATCTCTCTCTGGCACTTTCTCTCCGGCAATTGGAAATCTAACAAATCTTCGACAAGTATTGCTGCAGAACAACAATATCTCAGGCAATATACCACCGGAACTTGGAGCGCTTCCCAAGCTTCAGACATTAGACCTTTCCAATAACAGATTCTCAGGGGTGATTCCTGCATCTCTTAGTCAATTGAATAGTCTCCAGTACCTGAGGCTCAACAACAATAATTTGTCCGGATCCTTTCCCGAGTCACTGGCAAAAACCCCACAGCTTGCTTTCTTGGACCTGTCTTATAACAATCTCAGTGGACCATTACCTAAGTTCCCAGCCAGGTCATTCAATATTGTGGGCAACCCATTAGTTTGTGGGAGCAGCACTACTGAAGGTTGCTCTGGGTCAGCGACCCTCATACCCATTTCCTTCTCGCAAGTGTCATCAGAGGGAAAGCACAAATCCAAAAAACTAGCAATAGCACTTGGGACCAGTCTTAGTTGTGCTTCTGTCATCCTCCTGCTTGTTGGGCTATTTTGGTATAGAAAGAAACGACAGCTCGGAGCCATCCTATATATCAGTGATTACAAGGAAGAAGGAGTTCTTAGCTTGGGAAATCTAAAGAATTTCACTTTCAGAGAGCTTCAACATGCAACGGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGAGGCTTTGGCAATGTTTATCGGGGGAAGTTTGGAGATGGCACGATGGTAGCGGTGAAAAGGCTGAAAGATGTAAATGGCAGTGCTGGCGAATCGCAGTTCCAAACAGAGTTGGAGATGATCAGCTTGGCAGTTCATCGCAATTTACTTCGCTTAATTGGCTATTGTGCTACTCCTAATGAAAAACTTTTGGTTTATCCTTATATGTCTAACGGCAGTGTGGCCTCCAGGCTTAGAGGCAAACCAGCTTTAGATTGGAACACGAGAAAGAGGATAGCAATTGGAGCTGCCAGAGGCCTTCTGTATTTACACGAGCAATGTGATCCAAAGATAATACACAGAGACGTGAAGGCCGCCAATGTGCTTCTGGATGACTATTATGAGGCTGTTGTTGGAGATTTTGGCCTTGCAAAGCTCCTTGACCACGCTGATTCCCATGTCACCACTGCTGTCCGTGGCACTGTTGGACACATTGCACCTGAGTACCTCTCGACCGGCCAATCATCTGAGAAAACAGATGTGTTTGGATTTGGCATTCTCTTGTTAGAGCTCATAACCGGAATGACAGCACTCGAGTTTGGGAAAACGGTGAATCAAAAAGGTGCTATGCTAGAGTGGGTTAGGAAAATACTACATGAAAAGAAGGTTGCAGTGTTGGTGGACAAAGAGCTAGGAAACAATTATGATATAATAGAGGTGGGGGAGATGCTGCAAGTTGCTTTACTGTGTACTCAATATTTGACAGCCCACCGCCCTAAAATGTCTGATGTGGTTCGAATGCTAGAAGGTGACGGGCTTGCTGAGAAGTGGGCATCATCACATAATTACGGTAATCACGACATGAACCCGAGCCACAGCAACAATAGTTCATCCCTCCATACCTCTGCTTCGAAACATGATGATGTTCATGACCGTTCAAGCATGTTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGAATCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1893 0.4575 MALLFLFLLLFLSLSSASQPRNPEVEALMNIKAALNDPHGVLNNWDEYSVDACSWAMITCSSDDLVIGLGAPSQSLSGTFSPAIGNLTNLRQVLLQNNNISGNIPPELGALPKLQTLDLSNNRFSGVIPASLSQLNSLQYLRLNNNNLSGSFPESLAKTPQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLVCGSSTTEGCSGSATLIPISFSQVSSEGKHKSKKLAIALGTSLSCASVILLLVGLFWYRKKRQLGAILYISDYKEEGVLSLGNLKNFTFRELQHATDNFSSKNILGAGGFGNVYRGKFGDGTMVAVKRLKDVNGSAGESQFQTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYYEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKKVAVLVDKELGNNYDIIEVGEMLQVALLCTQYLTAHRPKMSDVVRMLEGDGLAEKWASSHNYGNHDMNPSHSNNSSSLHTSASKHDDVHDRSSMFGMTMDDDDEQSLESYAMELSGPR 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4072g00001 630 SMART LRR_typ_2 135 158 IPR003591 -
Vium4072g00001 630 SMART LRR_typ_2 87 110 IPR003591 -
Vium4072g00001 630 SMART LRR_typ_2 111 134 IPR003591 -
Vium4072g00001 630 MobiDBLite consensus disorder prediction 573 593 - -
Vium4072g00001 630 Pfam Protein kinase domain 291 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4072g00001 630 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Vium4072g00001 630 MobiDBLite consensus disorder prediction 594 610 - -
Vium4072g00001 630 FunFam Somatic embryogenesis receptor-like kinase 1 367 579 - -
Vium4072g00001 630 Gene3D Transferase(Phosphotransferase) domain 1 367 577 - -
Vium4072g00001 630 Gene3D Phosphorylase Kinase; domain 1 260 366 - -
Vium4072g00001 630 Gene3D Ribonuclease Inhibitor 21 203 IPR032675 -
Vium4072g00001 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Vium4072g00001 630 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Vium4072g00001 630 SUPERFAMILY L domain-like 21 190 - -
Vium4072g00001 630 SMART serkin_6 290 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4072g00001 630 ProSiteProfiles Protein kinase domain profile. 290 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4072g00001 630 FunFam Putative LRR receptor-like serine/threonine-protein kinase 21 203 - -
Vium4072g00001 630 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 3 569 - -
Vium4072g00001 630 FunFam Somatic embryogenesis receptor kinase 1 260 366 - -
Vium4072g00001 630 MobiDBLite consensus disorder prediction 572 630 - -
Vium4072g00001 630 Pfam Leucine rich repeat 112 172 IPR001611 GO:0005515
Vium4072g00001 630 SUPERFAMILY Protein kinase-like (PK-like) 273 560 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4072g00001 Vium-Chr4072 394 5829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4072g00001 4 505 Receptor kinase-like Gene Family AT2G23950 76.096 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium4072g00001 Pkinase 3.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4072g00001 - - gmx:100797186 1121.3