Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4071g00006 ATGGTGAGAGGAAAGACTCAAATGAGGCGCATAGAGAACGCCACAAGCAGGCAAGTTACCTTCTCCAAGCGGCGCAATGGGTTGCTGAAGAAGGCCTTTGAACTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCTCCAAGAGGAAAGCTTTATGAGTTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGCTACCGCAGGCATAACAGGAGTGCTCAAACAGTGAACAGATCTGATGAGAAGAATATGCAGCATTTGAAGCAAGAAACAGCAAACTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAGCTCTTGGGAGAAGGATTGGGTTCATGCTCCTTGGAAGAACTGCAACAGATAGAACAACAGTTGGAAAGGAGTGTAAGCAATGTTCGTGCAAGAAAGAATCAGGTTTACAAGGATCAAATCGAGCAACTAAAAGAAAAGGAAAGAACCCTATATGCTGAAAATGCCAGGCTGTGTGAGCAGTATGGTGTCCAGCAACAGCCAGGAACAAAGGAAGTGAAAGAAAATCAACCGTATGAAGAAAGCAGTCCAAGTTCAGAAGTGGAGACTGAATTGTTCATCGGACTACCTAGGTCTACTTTAACATAA 636 0.4371 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHNRSAQTVNRSDEKNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEQQLERSVSNVRARKNQVYKDQIEQLKEKERTLYAENARLCEQYGVQQQPGTKEVKENQPYEESSPSSEVETELFIGLPRSTLT 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4071g00006 211 Coils Coil 80 107 - -
Vium4071g00006 211 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Vium4071g00006 211 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Vium4071g00006 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Vium4071g00006 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vium4071g00006 211 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
Vium4071g00006 211 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium4071g00006 211 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium4071g00006 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium4071g00006 211 MobiDBLite consensus disorder prediction 172 198 - -
Vium4071g00006 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium4071g00006 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium4071g00006 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium4071g00006 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium4071g00006 211 FunFam MADS-box protein SOC1 14 95 - -
Vium4071g00006 211 Coils Coil 121 170 - -
Vium4071g00006 211 MobiDBLite consensus disorder prediction 172 211 - -
Vium4071g00006 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4071g00006 Vium-Chr4071 91483 109024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4071g00006 1 156 MADS-box Gene Family AT2G45660 78.205 4.70e-87 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium4071g00006 K-box 6.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4071g00006 - - gmx:100037477 372.089