Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4071g00002 ATGTTGCTACTAAATATGTTGTTGCTAAAGAGCCATACAAAATCCCTTTTTCTACTCTGCCTTCAATTATTGCTAATCTTAGCAAGCAGTGCTTCAGTTAATGGAGTTGAGCAGAAGAACTTTTACATTGTTTTCTTGGGAGCTCATACACAGAGCAGAGGAAATACACTTGAGACCTATTTAAATGTTCTATCTTCTGTGAAGGGAAGCTACCTTGAAGCCAAAGAATCTATGGTGCATAGTTACTCAAGGAACTTCAATGCATTTGCTGCAAAACTGTCAGAAGATGAAGCCAAGAAGTTATCTGCCATGGATGAAGTGCTTTTAGTGTTTCAAAATCAGTACCGTCAGCTACACACAACAAGATCATGGAACTTCATTGGGTTACCTCCAACAGCCAAAAGAAGATTGAAAGTAGAAAGTGACATAATTGTTGGTGTTATAGACACAGGAATCACACCTGAGTCTAAAAGCTTCAAGGACAATGGATTTGGTCCTCCACCAGCAAGATGGAAAGGATCTTGTGGCCATTATGCTAATTTCTCAGGCTGCAATAAAAAGCTCATAGGAGCCAAGTACTTCAAGGCTGATGGAAACCCTGATCCATCAGACATATTATCTCCTGTGGATACTGATGGACACGGCACTCACACTGCATCAACAGTTGCAGGAAATCTGATCCCAAATGCAAATCTCTTTGGGTTGGCCAATGGGACTGCTCGAGGTGCAGTTCCATCGGCAAGATTGGCAATTTACAAAGTTTGCTGGTCATTAAGTGGATGTGCAGACATGGACTTACTTGCTGCATTTGATGCTGCTGTACATGATGGTGTGGATGTCATATCTATTTCCATAGGTGGAGGAAATCCTAGTTATGTTCAAGACTCTATATCAATTGGTGCATTTCATGCCATGAGAAAAGGTATAATCACAGTGGCCTCAGCAGGAAATGCTGGTCCAAGCTTGGGAACTGTAACAAATACTGCACCATGGATTGTAACTGTAGCAGCAAGTGGCATTGATAGGACCTTCAAGAGCACTGTACAGTTGGGTAATGGAAAGAATTTTTCTGGGGTAGGTGTGAGTTGTTTTGATCCAAAAGGAAAACAGTATCCTCTTGTCAATGGGATCGATGCAGCCAAAGATCCAAAAGACAAGGAGGACGCTAGTTTCTGCTATGAAGGCACCTTACAGCCAAATAAAGTGAAGGAAAAGCTTGTTTACTGCAAATTAGGAGCATGGGGCACTGACTCTGTTGTTAAAGGAATTGGTGGCATTGGTACTCTAATAGAAAGTGACCAATTTCCTGATGTTGCTCAAATTTTCATGGCACCTGCTACCATTGTGAATAGTGTACAAGGGAACACTGTTACAAAATATATACAATCCACAAGATCACCATCAGCAATGATATACAAAAGCCACGAGGTGCAAGTGCGAGCTCCATTTACTGCTACATTTTCATCTAGAGGCCCAAATTCAGTATCCCAAAATGTTCTCAAGCCTGATGTTGCAGCTCCTGGCATTGACATCTTGGCATCTTATACTCTCAAAAAGTCACTCACTGGTCTAAAGGGGGACACTCAATTTTCAGAATTTATTCTAATGTCTGGAACTTCCATGGCATGTCCTCATGTTTCTGGAGTTGCTGCATATGTTAAGTCATTTCACCCACATTGGACTCCTGCTGCAATTAGGTCTGCTATTATCACAACAGCCAAACCAATGAGCAAGAGAGTTAACAGTGAGGCAGAATTTGCTTATGGGGCTGGTCAATTGAACCCAACAAGAGCTGTTAGCCCTGGTTTGGTCTATGACATGGATGACTTAGGGTATATCCAGTTCTTATGCCATGAGGGGTATAAAGGTTCCAGTTTATCAGTTTTAGTTGGTTCTCCAGTAAATTGCTCCTCTTTGCTTCCTGGGCTTGGCCATGATGCTATCAACTACCCCACAATGCAGTTGAGCCTTGAAAGCAGCAAAGACACAAAAGTAGGAGTTTTCAGAAGAACAGTGACCAATGTAGGTCCTGCTCCAACCATCTACAATGCCACCATCGTTTCACCTAAGGGAGTGGAAATCACAGTGAAGCCAACTAGCCTCACTTTTTCTGAAACCAAGAAGAAGAGGAGCTTCAAAGTAGTTGTGAAAGTCAAGTCTATCGGAAGTAACAAAATGGTATCAGGTTCCCTTATATGGAGAAGCCCACGTTACATTGTAAGGAGCCCTATTGTTATCAACATTCCATAA 2250 0.4196 MLLLNMLLLKSHTKSLFLLCLQLLLILASSASVNGVEQKNFYIVFLGAHTQSRGNTLETYLNVLSSVKGSYLEAKESMVHSYSRNFNAFAAKLSEDEAKKLSAMDEVLLVFQNQYRQLHTTRSWNFIGLPPTAKRRLKVESDIIVGVIDTGITPESKSFKDNGFGPPPARWKGSCGHYANFSGCNKKLIGAKYFKADGNPDPSDILSPVDTDGHGTHTASTVAGNLIPNANLFGLANGTARGAVPSARLAIYKVCWSLSGCADMDLLAAFDAAVHDGVDVISISIGGGNPSYVQDSISIGAFHAMRKGIITVASAGNAGPSLGTVTNTAPWIVTVAASGIDRTFKSTVQLGNGKNFSGVGVSCFDPKGKQYPLVNGIDAAKDPKDKEDASFCYEGTLQPNKVKEKLVYCKLGAWGTDSVVKGIGGIGTLIESDQFPDVAQIFMAPATIVNSVQGNTVTKYIQSTRSPSAMIYKSHEVQVRAPFTATFSSRGPNSVSQNVLKPDVAAPGIDILASYTLKKSLTGLKGDTQFSEFILMSGTSMACPHVSGVAAYVKSFHPHWTPAAIRSAIITTAKPMSKRVNSEAEFAYGAGQLNPTRAVSPGLVYDMDDLGYIQFLCHEGYKGSSLSVLVGSPVNCSSLLPGLGHDAINYPTMQLSLESSKDTKVGVFRRTVTNVGPAPTIYNATIVSPKGVEITVKPTSLTFSETKKKRSFKVVVKVKSIGSNKMVSGSLIWRSPRYIVRSPIVINIP 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4071g00002 749 CDD PA_subtilisin_like 347 471 - -
Vium4071g00002 749 Gene3D - 341 477 - -
Vium4071g00002 749 PRINTS Subtilisin serine protease family (S8) signature 210 223 IPR015500 -
Vium4071g00002 749 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Vium4071g00002 749 PRINTS Subtilisin serine protease family (S8) signature 537 553 IPR015500 -
Vium4071g00002 749 FunFam Subtilisin-like protease SBT1.5 142 367 - -
Vium4071g00002 749 SUPERFAMILY Subtilisin-like 118 603 IPR036852 GO:0004252|GO:0006508
Vium4071g00002 749 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 73 745 IPR045051 -
Vium4071g00002 749 Pfam Peptidase inhibitor I9 42 119 IPR010259 -
Vium4071g00002 749 ProSiteProfiles Serine proteases, subtilase domain profile. 123 599 - -
Vium4071g00002 749 ProSitePatterns Serine proteases, subtilase family, serine active site. 538 548 IPR023828 -
Vium4071g00002 749 Pfam Subtilase family 141 591 IPR000209 GO:0006508|GO:0008236
Vium4071g00002 749 CDD Peptidases_S8_3 117 573 IPR034197 -
Vium4071g00002 749 Pfam Fibronectin type-III domain 648 746 IPR041469 -
Vium4071g00002 749 Gene3D Peptidase S8/S53 domain 142 609 IPR036852 GO:0004252|GO:0006508
Vium4071g00002 749 Gene3D - 616 748 - -
Vium4071g00002 749 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 28 119 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4071g00002 Vium-Chr4071 17994 22986 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4071g00002 31 587 Subtilisin-like Serine Gene Family AT4G00230 63.914 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4071g00002 - - gmx:100795950 1292.33