Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4070g00024 ATGGATGCCAAAGATACTGGATTGCCAAAAAACTCATTCCCCTCTCTTGAGAAGAAGTCTCGACCTCCCAAAGAGTCTCAACGAAAACCTGATGGCATTTCGCGCGAGGTGTATGCGCTTACAGGTGGATTGGCCCCTCTTATGCCTTCTATTGAAGCTTCTCAATTGAAGAAAAAGCCTCCTCCTGTCGAAAAGATCACTTGGCAGTGGCTTCCTTTCACCAGCTCTGCCGTAAAAGATAATCTTCAACTTTACCACTGGGTGCGAGTTGTCAATGGTGTTCCTCCCACGGGGGACTATTCTTTTGCCAAGTATAATAAGGCCGTTGATGTGATCAAATACACAGATGAGGAGTATGACAAGTTTTTGACAAATCCTATGTGGACCAAAGAGGAGACTGATCAACTATTTGACCTATGTGAGAGATTTGATCTCCGATTTGTTGTAATAGCTGATAGGTTTCCATCATCTCGGACTGTCGAGGAATTAAAGGATAGATATTATAGTGTTTCGCGGGCTATATTGGTTGCTAGAGCTCCATCTTCTGGTGATGTTGCAGCACATCCTCTTGTTAAGGAACTGTATAATGTTTCACAAGAAATGGAGCGAAAGCGAGCACTGTCCATGGTCCTCTCTCAAACAAGGCAACAAGAACGCAGAGATGAAGAGGTTCTTGTTGAAGCAAAAAGAATAGCTGAATCTCGCATTCCACCCAAGGTTGCTGAAGAGTCTCACTTGGCTGCTTCTAATGCTGGTGCAGAAGCTACAGAAAGAGCTGTCCCTGGTGAAACTGTATCTCCATCGAATGTGCAACTTCCATCAATGGTTGTGCCTCCTACATTATCAGATAACGCATCTACTCTAGCTTCTCTTCGCATGCTTCGTGTATATTTGAGAACATATGCACTTGAGCAAATGGTGCAAGCTGCAAACTCATCTGCTGGACTTCGGACTATCAAACGGGTTGAGCAAACCTTGCAAGACCTTGGGGTCAATTTGAAACCAAGAGTTCCAACAAAAGCTGTTTGTGCGGAGCACCTTGAATTAAGAAAAGAAATACTAACTTGGCTTAATCTCCAGAAACAGGTTCAATATAAAGAGGCCGAAGGTTCCTCTTTTCGTGATGGGTCATATGGTGAAACACCTGGCACACCTAAGCATTTACATCGTGCTGGGGATCAGGATCGAACATTCATTCCAGATGCAATGAATTTTGGAGTGGAACGGGTTAGCAAAAAGGACCAAAAGCGTAAGGCACCTGGAGCTCCATCGGCTCATAAAAGACCTAGAAAACTAAAGGCCACAGATCTCTAG 1314 0.4422 MDAKDIXGLPKNSFPSLEKKSRPPKESQRKPDGISREVYALTGGLAPLMPSIEASQLKKKPPPVEKITWQWLPFTSSAVKDNLQLYHWVRVVNGVPPTGDYSFAKYNKAVDVIKYTDEEYDKFLTNPMWTKEETDQLFDLCERFDLRFVVIADRFPSSRTVEELKDRYYSVSRAILVARAPSSGDVAAHPLVKELYNVSQEMERKRALSMVLSQTRQQERRDEEVLVEAKRIAESRIPPKVAEESHLAASNAGAEATERAVPGETVSPSNVQLPSMVVPPTLSDNASTLASLRMLRVYLRTYALEQMVQAANSSAGLRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRKEILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKHLHRAGDQDRTFIPDAMNFGVERVSKKDQKRKAPGAPSAHKRPRKLKATDL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4070g00024 438 MobiDBLite consensus disorder prediction 242 268 - -
Vium4070g00024 438 SUPERFAMILY Homeodomain-like 125 174 IPR009057 -
Vium4070g00024 438 Gene3D - 98 184 - -
Vium4070g00024 438 MobiDBLite consensus disorder prediction 1 36 - -
Vium4070g00024 438 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Vium4070g00024 438 CDD SANT_DMAP1_like 129 171 - -
Vium4070g00024 438 FunFam DNA methyltransferase 1-associated protein 1 97 184 - -
Vium4070g00024 438 SMART sant 125 174 IPR001005 -
Vium4070g00024 438 MobiDBLite consensus disorder prediction 373 438 - -
Vium4070g00024 438 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 429 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Vium4070g00024 438 MobiDBLite consensus disorder prediction 408 422 - -
Vium4070g00024 438 MobiDBLite consensus disorder prediction 18 33 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium4070g00024 SANT_DAMP1_like 1.1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4070g00024 K11324 - gmx:100818926 804.668