Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4070g00023 ATGATTTCTGAGATGGAGAGGAGTTTATCAGAAAATGGTTCATCAGGAACATATGGAAGCAGTGAAGAGGAGATGTCAATAACCAAAGGTCCATGGACAGAGGAAGAAGATTCACTTCTCTTCGATTACATCACAGTTCACGGTGAAGGCCACTGGAACTCTGTCGCTCGCTACACAGGTCTCAAACGAACGGGAAAAAGCTGCAGACTCAGATGGTTGAACTACTTGCGTCCCAACGTTCGACGCGGGAACATCACGCTCCAAGAACAGCTCATGATTCTTGACCTCCATTCCCGATGGGGCAACAGGTGGTCGAAAATAGCTGAACATTTACCGGGGAGAACAGACAACGAGATTAAGAACTACTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTGAAATGTGACGTGAACAGCAAACAATTCAGAGACACGTTGCGTTTTGTGTGGATGCCACGTATGCTGGAACGGATTCAGGCTCAGGCCTCATCATCGGGCCAAGCCCAAACCACCTTAATGTCCAACGTTCAAGCCCACAGCGACCCTTGTGGTGGAGCCACCGCCACCGCCACCGCCACCGCCACCGCCACTGCCTCGGCCAGTGACGCGGGTTTTCCGTCAGAGGCCTCATCTGCGGCTGATGTCCACGGCCACTCTCTCTCTGACTCCGGCGCGTCTTATAGTTTAATGGGTGGTGGAAGTTGGTGTTCGTATGGTGCAGAAGAAGGTTATGGCAGGGAATGGGAAGAGAGAAACAAAGGGTACTCGGAGATAGCAGGAAGTGATTTTGGTGGTGTTGACATGTGGACGGAGGAGAATATTTGCTTCTTGCAGCAGCAGCTCGCTGATGACTTCTGA 861 0.5122 MISEMERSLSENGSSGTYGSSEEEMSITKGPWTEEEDSLLFDYITVHGEGHWNSVARYTGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLMILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQASSSGQAQTTLMSNVQAHSDPCGGATATATATATATASASDAGFPSEASSAADVHGHSLSDSGASYSLMGGGSWCSYGAEEGYGREWEERNKGYSEIAGSDFGGVDMWTEENICFLQQQLADDF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4070g00023 286 Gene3D - 86 127 - -
Vium4070g00023 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
Vium4070g00023 286 SUPERFAMILY Homeodomain-like 26 123 IPR009057 -
Vium4070g00023 286 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Vium4070g00023 286 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Vium4070g00023 286 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Vium4070g00023 286 MobiDBLite consensus disorder prediction 1 27 - -
Vium4070g00023 286 MobiDBLite consensus disorder prediction 1 29 - -
Vium4070g00023 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 131 IPR017930 -
Vium4070g00023 286 FunFam MYB transcription factor 86 149 - -
Vium4070g00023 286 CDD SANT 31 76 IPR001005 -
Vium4070g00023 286 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 193 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium4070g00023 286 Gene3D - 28 81 - -
Vium4070g00023 286 SMART sant 81 129 IPR001005 -
Vium4070g00023 286 SMART sant 28 78 IPR001005 -
Vium4070g00023 286 CDD SANT 86 125 IPR001005 -
Vium4070g00023 286 FunFam Myb transcription factor 29 81 - -
Vium4070g00023 286 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4070g00023 Vium-Chr4070 207964 209438 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4070g00023 5 285 MYB Transcription Factor Family AT2G47190 47.163 7.05e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium4070g00023 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4070g00023 K09422 - gmx:100819467 394.045