Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4070g00022 ATGGATGTTAACATGAAGAAATCACGGTCCGCAGAAGAGGCGAATAGTGAAGACACTAGAAAAGGTCCGTGGAGCGTTGAAGAGGACACTCTTCTCCAAAATTACGTCGCCACCCACGGCGACGGTCGCTGGAATTCCGTCGCACGCTGTGCAGGCCTTAAGAGATCAGGGAAAAGTTGCAGGCTGAGATGGTTAAACTACTTGCGGCCCGATGTTCGTCGTGGAAATATAACACTCCAGGAACAGATAACCATTCTGGACCTTCACTCTCGGTGGGGCAATAGGTGGTCGAAAATTGCTCGGCATCTTCCCGGTAGAACGGACAACGAAATAAAGAATTATTGGAGGACTCGTGTGCTTAAGCAAGCAAGGAATCTGAAGTGTGACGTGGACAGTGAACAGTTCAAAGATGCCTTACGTTACGTGTGGATGCCCCGTTTGATTGAGCGCATTGAACCGTCATCGGAAACTCACCACCCGCCCCCTGTGTCCCTCTTCGAACTTCACCCGAACCCAACTCCTTCGCTCCATCACCAAAACGGGTTTCACGGTTCGTCAAGTGCCAAGTTGGAGACTCCTTTAGAGCCTGAAGATATGGGTCATAATAATGTTTCAGTTCCGGGAGTGTGTGAAAATATGAATGATCGAGACGTGGAACAGGGGAATATCACGCTACCTTTTGCTGGTGGGGACTCAATGGAGAGTTTGTGGGATGATGAGACTCTGTGGCTTATGCAGCAACTTTGTGATGATCTGGAAATTAAAGACAATTTCCTTGCGTGA 783 0.4879 MDVNMKKSRSAEEANSEDTRKGPWSVEEDTLLQNYVATHGDGRWNSVARCAGLKRSGKSCRLRWLNYLRPDVRRGNITLQEQITILDLHSRWGNRWSKIARHLPGRTDNEIKNYWRTRVLKQARNLKCDVDSEQFKDALRYVWMPRLIERIEPSSETHHPPPVSLFELHPNPTPSLHHQNGFHGSSSAKLETPLEPEDMGHNNVSVPGVCENMNDRDVEQGNITLPFAGGDSMESLWDDETLWLMQQLCDDLEIKDNFLA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4070g00022 260 Gene3D - 78 119 - -
Vium4070g00022 260 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Vium4070g00022 260 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Vium4070g00022 260 CDD SANT 78 117 IPR001005 -
Vium4070g00022 260 FunFam Myb transcription factor 21 73 - -
Vium4070g00022 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Vium4070g00022 260 FunFam MYB transcription factor 78 141 - -
Vium4070g00022 260 Gene3D - 22 73 - -
Vium4070g00022 260 MobiDBLite consensus disorder prediction 173 187 - -
Vium4070g00022 260 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Vium4070g00022 260 MobiDBLite consensus disorder prediction 170 199 - -
Vium4070g00022 260 CDD SANT 23 68 IPR001005 -
Vium4070g00022 260 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 167 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium4070g00022 260 SMART sant 73 121 IPR001005 -
Vium4070g00022 260 SMART sant 20 70 IPR001005 -
Vium4070g00022 260 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Vium4070g00022 260 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Vium4070g00022 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Vium4070g00022 260 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4070g00022 Vium-Chr4070 179412 180579 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4070g00022 2 251 MYB Transcription Factor Family AT2G47190 46.909 7.49e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium4070g00022 Myb_DNA-binding 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4070g00022 K09422 - gmx:100797220 367.081