Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4070g00005 ATGGATGACTGTTGTGCTGTTTGCGCAGAGCCTTTGGAATGGGTCGCCTACGGACCCTGTTTGCACCGGGAGGTGTGCTCCACGTGCGTCGCTCGCCTCCGTTTCATATGCGACAATCGCTGTTGCTGCATCTGCAAGACCGAATGCAACCACGTATTCGTCACCAAGGCTCTAGGAGATTATACAAAGATGATTAATGATTTTGCTGCCCTTCCTTCGGATGTAAGGGAGGGCAAGATTGGATCATATTGGTACCATGAGGATACAAATGCATTTTTTGATGATGTGGACCATTACAAGATGATCAAGGCTATGTGTAGACTTTCGTGCAGTATATGTGAAAAGACGGATGAACAACCACAGGGTTCTGCTTCAAGACGACGAGAACAGTTTAAGAATATAGGGCAATTGAAGGGTCATATATTCCACCGTCACAAGTTGCATATGTGCAGTTTGTGTTTGGAGGGCAGGAAGGTTTTTATATGTGAGCAAAAGCTATATACCAGAGCACAGTTGAATCAACACATAAGCACAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTCATGGGGCATCCCATATGTGAATATTGCAGAACCCGATTTTATGGAGACAATGAATTGTACGTGCATATGTCTACAGAGCATTATACTTGTCATATATGCCAGAGGCAGCATACAGGGCAGTATGACTACTTTAAGAATTATGATGACCTAGAGATTCACTTCCGTAAAGAGCACTTCTTATGTGAAGATGAGGCTTGTCTTGCTAAGAAATTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAAGCATAATGCTATCGAACATGGAGGACGGATGTCACGATCTAAGCGGAATGCTGCTCTTCAGATTCCAACTAGCTTCCGATACAGACATGGTAATGAACAAGAGCAACGCCGTGGAAGAAATCGTTCTTTTCGTCGTGATTTTACTGAAAACCAACTTGCAATGGCCATTGAAGCTAGTCTAGAGACAGCTAATGTAGAGCAAACATTTCGTAATCAATCAGCATCAGGTAGTGGGCAAGTTGCTGTTGATGATGGGAATGGAGACATTGATTCTTTCATTCAGCCATTTGAATCATTGGCTGTCACTGGTTCTGAAGCATCTTCAAGATACCTTCAAGCCTTGGGACATAGCTCAAGGAGTGGACCTCTGGAGGATTCTTCATTTCCACCACTACCCGTAACTTCCAACAATGGCCATCAAGGATCCAAACAGGAAGTCGAAGGCTCATCTAGTAATTCCATGGCTGCACGTCTGCGTCGTCATAACAACAGAACTGTAACAGTTGTTAATTCTGGTAATGCTTGGCCAGCAGCAGGTCGTGGACTGGTACAACCGTCAAGTAATCCTTCACAATTTCGACAGTCATCAAATAATGCTCTGGGTCTTTCTCGTAATTCTGGGCAGACAAAGAAGACTGTAATTAACAGTGGACTTTCACCATCAACTTATGCTGGTTCTATTCAGTCTACCCAAAGAACTTCTCGTGGACACTTACCTGGTGGTTCATCGAGGGACACACGTGACAATGTTAGAATTGTTCACTCTGCATCTGCCCCGAATCTCACGGAGAACAACTCTGTTGAAGCTTCACTAACTGATTTTCCTCCTGTTTCTGCTCCACAAGCGAGCAAGATACCTGCTAGCAGTCATTCTTCATTGAATGTGGAAAATGTTCAGTCTGCTAACCAGTCCCTGGTTGAAAAGATTCGATGTGCTCTTGATTTTGATGAAGAAAGGTACAGTATGTTTAAGGATATATCTGCCCAATATGGCCAAGGCACAATAGATACGGAAACTTATATGGACTATGTGCAGAACTTTGGCTTGTCTCGTCTTGTGCTTGAGTTGGCAAGATCATGCCCTGATACTCAGAAGCGGGCAGAGCTTGTTAGTGCTAGCTTGCAAAGAGATGTTTTACTGGAAAATAACTTGGTTCAAAGCAGCACAAGCACCCATCGCAAAGACAGTAATGTAAACAAGAAAGGCAAAGGTAAGTCTGTAGATAGTAGGGGGAGTAACCCCACAGAGAAATTAGCAGATAACTTTTTAAGCACCGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAGGTGGAGGTGCTATCAAGGGATGATTACCGAAGCGACAGGGGCAAATTAAAAATCGAACAGCGGACTGATACCAATTCTGGAAGTCAACCTGCGGTGAAGCTTAGTGGGAAGACTGAAACATCAAATGGCAGTTTATCTACTCAAGTTAGAGAGGATGGTGGTGGTGGGAACAAGCAACGCAAGAAAGGTTCAAAGTTCCTGAGAGTACGACTTGGTGATGGTTCTGCTTCGGCCCTTTTTGATCAACCTGATCCTGGAAAAACAGACAGCTCAGAAGTTAACGATGAACCTGGAGGAGGGCCACCTGTGCGTGGTGTTTGGCGAAAAGGGGGAGGTCATAAACTTTTTCTCTAA 2496 0.4403 MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDNRCCCICKTECNHVFVTKALGDYTKMINDFAALPSDVREGKIGSYWYHEDTNAFFDDVDHYKMIKAMCRLSCSICEKTDEQPQGSASRRREQFKNIGQLKGHIFHRHKLHMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPICEYCRTRFYGDNELYVHMSTEHYTCHICQRQHTGQYDYFKNYDDLEIHFRKEHFLCEDEACLAKKFVVFQSEAEMKKHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEQEQRRGRNRSFRRDFTENQLAMAIEASLETANVEQTFRNQSASGSGQVAVDDGNGDIDSFIQPFESLAVTGSEASSRYLQALGHSSRSGPLEDSSFPPLPVTSNNGHQGSKQEVEGSSSNSMAARLRRHNNRTVTVVNSGNAWPAAGRGLVQPSSNPSQFRQSSNNALGLSRNSGQTKKTVINSGLSPSTYAGSIQSTQRTSRGHLPGGSSRDTRDNVRIVHSASAPNLTENNSVEASLTDFPPVSAPQASKIPASSHSSLNVENVQSANQSLVEKIRCALDFDEERYSMFKDISAQYGQGTIDTETYMDYVQNFGLSRLVLELARSCPDTQKRAELVSASLQRDVLLENNLVQSSTSTHRKDSNVNKKGKGKSVDSRGSNPTEKLADNFLSTVHQLQANYKSSEEKVEVLSRDDYRSDRGKLKIEQRTDTNSGSQPAVKLSGKTETSNGSLSTQVREDGGGGNKQRKKGSKFLRVRLGDGSASALFDQPDPGKTDSSEVNDEPGGGPPVRGVWRKGGGHKLFL 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4070g00005 831 MobiDBLite consensus disorder prediction 390 430 - -
Vium4070g00005 831 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Vium4070g00005 831 MobiDBLite consensus disorder prediction 735 767 - -
Vium4070g00005 831 MobiDBLite consensus disorder prediction 713 734 - -
Vium4070g00005 831 Coils Coil 701 721 - -
Vium4070g00005 831 MobiDBLite consensus disorder prediction 458 515 - -
Vium4070g00005 831 MobiDBLite consensus disorder prediction 660 692 - -
Vium4070g00005 831 ProSitePatterns Zinc finger C2H2 type domain signature. 199 220 IPR013087 -
Vium4070g00005 831 MobiDBLite consensus disorder prediction 452 524 - -
Vium4070g00005 831 MobiDBLite consensus disorder prediction 708 831 - -
Vium4070g00005 831 CDD RING-HC_ZNF598 3 54 IPR041888 -
Vium4070g00005 831 PANTHER ZINC FINGER PROTEIN 598 1 739 IPR044288 GO:0061630|GO:0072344
Vium4070g00005 831 MobiDBLite consensus disorder prediction 547 567 - -
Vium4070g00005 831 SMART c2h2final6 197 220 IPR013087 -
Vium4070g00005 831 SMART c2h2final6 221 251 IPR013087 -
Vium4070g00005 831 SMART c2h2final6 108 145 IPR013087 -
Vium4070g00005 831 SMART c2h2final6 252 281 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4070g00005 1 830 C2H2 Transcription Factor Family AT3G62240 50.173 0.0 791