Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4068g00007 ATGAAGAAGCTTTCTCTTTATGCTTGTTTACTCAATTTGAGTTTCTTGGTTCTTCTTCCTCATAGCAAAGCCAATCAAGCTGATAAACTTGATGAGTTGATTCTGTCTAGGAGCTCACAGAAGCCTCCTGTGACTCTTTCTTGGGCAGAGGAAGATGCATTGAAAACTCATTCTTCTGCTTATGTTGCACCCCAAGAGGGACTTCAACAAGCTGATAAGATTGTTGCATTGCCTGGCCAGCCATATGGGGTAAATTTTGATCAATATTCAGGCTATGTCACTGTTGATCCAGAGGCTGGAAGAGCACTTTTCTATTATTTTGTGGAGTCTCCATATAACCCTTCAACTAAACCATTAGTATTGTGGTTAAATGGAGGACCTGGTTGCTCCTCATTGGGGTATGGCGCCTTTGAGGAATTGGGACCTTTCAGAATAAACTCTGATGGAAAAACACTCTATCGTAACAAAGATGCTTGGAATGAAGTGGCAAATGTGTTGTTCTTGGAATCCCCAGCTGGAGTGGGCTTTTCCTACTCAAACACTACTTCAGACTATGATAATGCAGGAGATAAATCTACTGCTAATGATGCCTATGTTTTTCTCATCAATTGGCTAGAAAGGTTTCCACAGTACAAAACTCGTGATTTCTACATAACTGGGGAGAGCTATGCTGGCCATTATGTGCCTCAGCTTGCATATACTATTTTGCTCAACAATAAATACAGTCCCCAAAGTATTAACCTCAGAGCCATTGCTATTGGGAATGCTTGGATTGATGATGTTACAAGTGTGAAGGGGATATTTGACTACTTATGGACTCATGCTTTGAGCTCAGATCAAACACATGAGTTGATTGAGAAGTACTGCGATTTCACTGCTGAAAATGACTCAGCAATATGTGCCAATGCAACAAGAACTGCCCTTATTGAAAAAGGAAAGATAGACTTCTATAACATCTATGCTCCATTGTGTCTTGACTCTTCTATCAAAAATGGATCAACAGGCTCTGTAAGTAATATACTCCTACGTATTGTATATGATTTCGACCCTTGTTCTGATTATTACGGGGAAGCCTACCTAAATAGGCCAGAAGTCCAACTAGCTCTTCATGCGAAACCCACAAACTGGACCCACTGCAGTGATCAATTAAGCTGGAACGACAGTCCCACTACCATCCTGCCAATAATAAAGTATCTCATCGATAGTGGCATTGGATTGTGGATATACAGTGGTGATACTGATGCAAGGGTGCCAGTCACATCTTCCAGATATTCAATCAACACCCTCAAGCTACCTATCCAGGTTCCTTGGCGTCCATGGTATTCTGAACAAGAGGTTGGAGGGTATGTGGTGAAATACGAAGGAATTACATTTGTTACAGTTAGAGGAGCAGGACATTTGGTTCCGAGCTGGCAACCAGAACGGGCTCTCACCTTCATCACTTCCTTCCTCTATGGAACCTTGCCTCCTGCTTCACCATGGAAGGCTTTTTAA 1494 0.4197 MKKLSLYACLLNLSFLVLLPHSKANQADKLDELILSRSSQKPPVTLSWAEEDALKTHSSAYVAPQEGLQQADKIVALPGQPYGVNFDQYSGYVTVDPEAGRALFYYFVESPYNPSTKPLVLWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYRNKDAWNEVANVLFLESPAGVGFSYSNTTSDYDNAGDKSTANDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLAYTILLNNKYSPQSINLRAIAIGNAWIDDVTSVKGIFDYLWTHALSSDQTHELIEKYCDFTAENDSAICANATRTALIEKGKIDFYNIYAPLCLDSSIKNGSTGSVSNILLRIVYDFDPCSDYYGEAYLNRPEVQLALHAKPTNWTHCSDQLSWNDSPTTILPIIKYLIDSGIGLWIYSGDTDARVPVTSSRYSINTLKLPIQVPWRPWYSEQEVGGYVVKYEGITFVTVRGAGHLVPSWQPERALTFITSFLYGTLPPASPWKAF 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4068g00007 497 SUPERFAMILY alpha/beta-Hydrolases 75 487 IPR029058 -
Vium4068g00007 497 ProSitePatterns Serine carboxypeptidases, histidine active site. 456 473 IPR033124 GO:0004185
Vium4068g00007 497 Pfam Serine carboxypeptidase 78 484 IPR001563 GO:0004185|GO:0006508
Vium4068g00007 497 ProSitePatterns Serine carboxypeptidases, serine active site. 218 225 IPR018202 GO:0004185
Vium4068g00007 497 Gene3D - 392 486 - -
Vium4068g00007 497 FunFam Carboxypeptidase 348 488 - -
Vium4068g00007 497 Gene3D - 351 384 - -
Vium4068g00007 497 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 74 473 IPR001563 GO:0004185|GO:0006508
Vium4068g00007 497 Gene3D alpha/beta hydrolase 69 325 IPR029058 -
Vium4068g00007 497 FunFam Carboxypeptidase 392 486 - -
Vium4068g00007 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 204 229 IPR001563 GO:0004185|GO:0006508
Vium4068g00007 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 168 178 IPR001563 GO:0004185|GO:0006508
Vium4068g00007 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Vium4068g00007 497 PRINTS Carboxypeptidase C serine protease (S10) family signature 155 167 IPR001563 GO:0004185|GO:0006508
Vium4068g00007 497 FunFam Carboxypeptidase 68 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4068g00007 Vium-Chr4068 112080 115166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4068g00007 348 486 Calmodulin-binding Proteins AT2G22960 27.703 4.58e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4068g00007 K16297 - gmx:100790394 894.419