Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4068g00003 ATGAGTTTGGTGGTAGTGATTACGGAGATAGATAGCGGTTACGAAGGTTGGTGGGGATTTAGGATTTTGGAAATGCATTTGATGTGGGAGTTATTCCATTCAACCCTGACGGTTGGCGATTGTTGGAAATTGCGTTCGTGGAGTGGTACATGTTCCTTTTCTTTTCTTGTTTGTGATTTCTGCCTCAACTTTCTTATTGCAACATTGTGGAAATTGATGCTATGGTTGGAAACGCCACTTAAGGTTGAATTTGAGGTGCGACGGAGGCTTACAGGAAGAATGAGGGATGAAGTGGATAATGCTATCAAGTTAAGGAAGTTGTCACCTAAGTTTCTCGACCCCTATGAGCTTCTTAGGCGGATTGGACTAGTAGTTTACAAGATAGCGTTACCACCACTCCTCCCGTGGACGCACAAGGATTCCGCCGTTTATGCGCTTCACACTGCGTGCTTCACACTGCGCTTTCTATCCAGAAAATCCAAGAAAGACAAAAGGTCTAAACCAAAGAATGATGTGCACAACCAGGTGACCCCTCTTCCTGAGCTAATTGTCGAGCCAACAAATGCAAGATCAATGTCCTTTGTTGGAACACACGAGTACTTGGCCCCAGAGATCATCAAGGGTGAAGGGCATGGAAGTGTTGTGGACTGGTGGACATTTGGCATATTCCTGTATGAGCTTCTGTTTGGTAGAACACCATTCAAAGGTCCTGCAAACCGTGCAACTTTGTTCAATGTAATTGGTGAGCCTCTAAGATTTCCAGAATCTCCAACCGTTAGCTTTGCTGCCAGAGATTTGATCAGAGGGTTGCTTGTGAAGGAGCCCTAG 828 0.4517 MSLVVVITEIDSGYEGWWGFRILEMHLMWELFHSTLTVGDCWKLRSWSGTCSFSFLVCDFCLNFLIATLWKLMLWLETPLKVEFEVRRRLTGRMRDEVDNAIKLRKLSPKFLDPYELLRRIGLVVYKIALPPLLPWTHKDSAVYALHTACFTLRFLSRKSKKDKRSKPKNDVHNQVTPLPELIVEPTNARSMSFVGTHEYLAPEIIKGEGHGSVVDWWTFGIFLYELLFGRTPFKGPANRATLFNVIGEPLRFPESPTVSFAARDLIRGLLVKEP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4068g00003 275 Gene3D Transferase(Phosphotransferase) domain 1 188 275 - -
Vium4068g00003 275 ProSiteProfiles Protein kinase domain profile. 1 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4068g00003 275 PANTHER FLIPPASE KINASE 1-RELATED 147 275 - -
Vium4068g00003 275 SMART serkin_6 84 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4068g00003 275 SUPERFAMILY Protein kinase-like (PK-like) 187 275 IPR011009 -
Vium4068g00003 275 Pfam Protein kinase domain 191 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4068g00003 Vium-Chr4068 29676 31673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4068g00003 148 275 AGC Kinase Gene Family AT5G47750 81.250 1.67e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vium4068g00003 Pkinase 2.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4068g00003 K08286 - vum:124836595 553.518