Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4063g00001 ATGAGTTTCTTTCAGGGAATTATTGATTCCTTAAACTCCATCTTCGTCCCAGATAACAATCACAACACCGCAAATTCTTCTTCTTCTTCTTCAAAGGATCCAATGGAAGCTCCTCCTCCTTCCGTTTCGAACGAGCGCGTGGCTTACAAGCTGAAAGGCTACTTCGATTTGGCGACGCAGGAGATCGCGAAGGCCGTTAGGGCTGAGGAATGGGGTTTGGCAGACGACGCGCTTCTTCACTACAGGAACGCGCAATCGATCCTTGTCGAAGCTAATTCAACTCCAGTTCCTTCCTACATCACCTCCAGTGAACAGCAGAAGGTTCAGTCATATCGTGAGAAGATATCCAAATGGCAGAGTCAAGTTTCTGAGAGATTGCAGACTCTCTCTAGACGAGCTGGTAGCTCATCAGCCAATCAGAGCACTGCTGCAATACCGATCAAGCCATTGGGTACTAGAAAAAATGTGTTACAAAAGCCTCCTCAAAGAATAGGTCAGGCGAATAAAGTTGGAAGCCCAAAATCGAGTCAAGCATCTGGTGTAAATTATGATACCAAACTAGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCATCTGTTAGATGGGAAGATGTTGCCGGGCTCGAAAAGGCAAAGCAATCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTTACTGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCACCTGGTAATGGAAAAACCATGCTTGCCAAAGCAGTGGCGTCAGAATCACAAGCAACATTTTTTAATGTCACGGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCAAGACAGCCATCAGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGTTGGCCAATGAGAATGATGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACAAATAAGCCACAAGAATTGGATGATGCAGTTCTTAGGAGACTGGTAAAGAGAATATACGTACCTTTACCAGATGAAAATGTTCGAAAGCTTCTGTTAAATCACAAGCTCAAGGGTCAAGCATTCTCCTTACCTAGTAGAGATCTAGAGAAGCTTGTAAAAGAGACAGAAGGATATTCTGGTAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGTTGGGTGCTGACATTCTTACTGTTAAGGCTAATCAGGTAAGAGGACTAAGGTACGAGGATTTTAAGAAGGCAATGGCTGTAATTAGACCGAGCTTAATCAAAAGTAAGTGGGAAGAGCTTGAGCGCTGGAATAAGGAATTTGGCTCTAATTGA 1431 0.4305 MSFFQGIIDSLNSIFVPDNNHNTANSSSSSSKDPMEAPPPSVSNERVAYKLKGYFDLATQEIAKAVRAEEWGLADDALLHYRNAQSILVEANSTPVPSYITSSEQQKVQSYREKISKWQSQVSERLQTLSRRAGSSSANQSTAAIPIKPLGTRKNVLQKPPQRIGQANKVGSPKSSQASGVNYDTKLVEMINTAIVDRSPSVRWEDVAGLEKAKQSLMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVTAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRKLLLNHKLKGQAFSLPSRDLEKLVKETEGYSGSDLQALCEEAAMMPIRELGADILTVKANQVRGLRYEDFKKAMAVIRPSLIKSKWEELERWNKEFGSN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4063g00001 476 PANTHER AAA DOMAIN-CONTAINING 103 475 - -
Vium4063g00001 476 SMART AAA_5 237 373 IPR003593 GO:0016887
Vium4063g00001 476 Gene3D - 200 470 IPR027417 -
Vium4063g00001 476 Pfam ATPase family associated with various cellular activities (AAA) 241 371 IPR003959 GO:0005524|GO:0016887
Vium4063g00001 476 Gene3D - 43 133 - -
Vium4063g00001 476 SMART smart 51 128 IPR007330 -
Vium4063g00001 476 FunFam AAA-type ATPase family protein 44 133 - -
Vium4063g00001 476 Pfam AAA+ lid domain 396 427 IPR041569 -
Vium4063g00001 476 CDD MIT_spastin 51 129 - -
Vium4063g00001 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 473 IPR027417 -
Vium4063g00001 476 FunFam AAA-type ATPase family protein 372 454 - -
Vium4063g00001 476 CDD RecA-like_spastin 206 369 - -
Vium4063g00001 476 MobiDBLite consensus disorder prediction 22 37 - -
Vium4063g00001 476 FunFam Spastin, putative 200 383 - -
Vium4063g00001 476 Gene3D - 372 454 - -
Vium4063g00001 476 ProSitePatterns AAA-protein family signature. 343 362 IPR003960 GO:0005524|GO:0016887
Vium4063g00001 476 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4063g00001 Vium-Chr4063 8011 13506 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4063g00001 182 426 Calmodulin-binding Proteins AT3G56690 40.945 1.34e-47 174