Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4062g00007 ATGGCATTGAACTCCATGGCTGCTTCTCATTCCCATTTCCCAAGTGACTCAGGCCAGCATCGACATCCTACTCGTCAATCTGCATCAAAAGTGTGTCGAGTTTGTAGTGATCAGATTGGACATGGGGAAAATGGAAAGCTTTTTGTGGCTTGCAATGTGTGTAGTTTTCCTGTTTGTCAACCCTGCTATGAGTATGAGAGGAGTGAAGGGAACCAGTGCTGCCCTCAGTGCAACACCCGCTATAAGCGCCACAAAGGTTGTCCTAGAGTAGCTGGTGATGATGAGGAGCATTCTGATGCAGATGATTTTCATGATCCAGATGAGAAACATGATGCCAATCATTGGGAAAATAAAGACCACAAGGAACAGCAGTGGCATCCGAAAGGTCAAGCTTTATCTTCAGCAGGAAGTGTGGCTAGTAAGGAATTTGAAGGGGAGAAGGAATTCTTCAGTAATGGAGAATGGGAAGAAAGATTAGAGCAATGGAAAGCCAGGCAAAAAAAGAGAGGTATTCTTAACAAAGAGGAAGCCAAAGATGACCAGGGAGAAGATGATTACCTTTTGGCTGAAGCTAGGCAACCATTGTGGCGTAAGGTTCCAATATCTTCAAGTCTAATCAACCCATATCGCATAGTCATAATCATGAGGCTCTTTATCCTCGTTTTCTTCCTCCGTTTCCGTGTCTTAACTCCAGCATATGATGCATATCCACTGTGGCTTGCCTCTGTGATGTGTGAAGTATGGTTTGCACTGTCATGGATACTTGACCAGTTCCCCAAATGGTTCCCCATAACTCGTGAAACTTACTTGGATCGCTTGTCCATGAGGTTTGAGCGTGAAGGGGAGCCAAACCTTCTAGCCCCAGTTGATGTCTATGTGAGTACTGTGGACCCTTTGAAAGAGCCTCCCATTATAACAACAAACACTGTTCTTTCAATCCTGGCTGTTGATTACCCGGTTGACAAGGTGTGTTGCTATGTATCTGATGATGGTGCGTCTATGCTCCTTTTTGATGCACTTTCAGAAACTTCTGAGTTTGCACGAAGATGGGTTCCTTTTTGTAAGAAGTATAGCATAGAGCCAAGGGCACCGGAGTTCTATTTTTCTCAGAAGATTGATTACTTGAAAGATAAGGTGCAGCCTACCTTTGTGAAGGAACGAAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTAAAAATTAACTCCTTAGTGGCAAAAGCTCAGAAGAAGCCTGAGGACGGGTGGGTGATGCAGGATGGAACCCCTTGGCCTGGCAACAGTACTCGTGATCATCCAGGAATGATTCAGGTGTATTTAGGAAGTGGTGGTGCACTGGACGTAGAAGGCAAGGAACTGCCACGGCTGGTGTATATTTCACGTGAAAAGCGTCCTGGCTATAACCACCACAAGAAAGCTGGTGCTATGAATGCTTTGGTTCGAGTTTCAGCTGTGCTTTCAAATGCACCTTTCATGCTGAATCTGGATTGTGACCATTACATAAACAATAGCAAGGCTATAAGAGAGGCCATGTGCTTTTTAATGGACCCCCAGATAGGAAAGAAGCTCTGCTATGTCCAATTTCCACAAAGATTCGATGGTATTGATCGTCATGATAGATATGCTAACCGAAATATTGTATTCTTTGATATAAATATGAAAGCCCTTGACGGGATTCAGGGTCCAGTTTATGTTGGAACTGGATGTGTGTTCAATAGGCAGGCACTATATGGATATGATCCACCAGTATCTGAGAAAAGACCAAAGATGACCTGTGACTGCTGGCCTTCATGGTGTTGTTGTTGTGGTTGTTCGAGGAAATCCAAGTTAAAGAAGAAATCTGGTGGAAGAGGGGGTCTCTTTAGTAGATTATACACCAGGAAGAAGAAAATGATGGGGAAGAACTACGTTAGGAAAGGGTCTGAGTCCATGTTTGATCTTGATCTTGAAGAGATTGAAGAAGGGCGTGAAGGGTATGGCGAGCTAGAGAAATCATCCCTCATGTCCCAAAAAAAGTTTGAGAAGAGATTTGGGCAGTCACCAGTTTTCATTGAGTCCACTTTGATGGAAAATGGTGGACTTCCTGAAGGCACCAACAGTCAATCGCTAATTAAGGAAGCTATTCATGTTATAAGTTGTGGCTATGAAGAGAAGACTGAATGGGGAAAAGAGATTGGATGGATATATGGCTCAGTCACAGAAGATATATTAACAGGGTTTAAGATGCATTGTAGAGGATGGAAATCAGTATACTGCATGCCAAAAAGAGACGCTTTCAAAGGATCTGCCCCAATAAATCTATCAGATAGGTTACACCAAGTTCTGAGATGGGCCCTTGGTTCTGTTGAAATTTTCCTTAGTCGCCATTGTCCATTGTGGTATGGCTATGGAGGAAAACTGAAATGGCTGGAGCGGTTGGCTTATACTAATACCATTGTTTATCCATTCACTTCCATCCCTCTACTTGCATACTGCACAATTCCAGCAGTTTGTCTTCTCACTGGAAAATTCATCATCCCAACTTTGACGAACCTTGCCAGCGTATGGTTCATGGCTCTATTCATCTCCATCATTTTAACTGGTGTGCTAGAGCTGAGGTGGAGTGGTGTGAGCCTTGAAGACTGGTGGCGCAATGAACAATTTTGGGTGATTGGAGGAGTATCTGCTCACCTTTTTGCTGTATTCCAAGGTCTCCTTAAGGTTCTTGGAGGAGTGGACACCAATTTCACAGTGACAGCCAAAGCAGCAGATGATACTGAATTTGGAGAGTTGTACCTGTTCAAGTGGACAACACTTCTGATCCCACCAACCACTCTTATAATCTTGAACATGGTGGGAGTTGTGGCTGGAGTATCTGATGCCATTAACAATGGGTATGGTTCATGGGGTCCTTTGTTTGGGAAGGTATTCTTTGCTTTCTGGGTTATTGTCCATTTATATCCTTTCCTCAAAGGTCTCATGGGAAGGCAAAACAGAACTCCTACTATTGTTGTCCTTTGGTCAATTCTTTTGGCATCAATTTTCTCTTTGATTTGGGTTAGAATTGATCCTTTCTTGCCAAAACAAACTGGCCCAGTTCTCAAACNTAGACATCGACCTCCTACTCGTCAATCTGCATCAAAAGTGTGTCGAGTTTGTAGTGATCAGATTGGACATGGGGAAAATGGAAAGCTTTTTGTGGCTTGCCATGTGTGTAGTTTTCCCGTTTGTCAACCCTGCTATGAGTATGAGAGGAGTGAAGGGAACCAGTGCTGCCCTCAGTGCAACACCCGCTATAAGCGCCACAAAGGTTGTCCTAGAGTAGCTGGTGATGATGAGGAGCATTCTGATGCAGATGATTTTCATGATCCAGATGAGAAACATGATGCCAATCATTGGGAAAATAAAGACCACAAGGAACAGCAGTGGCATCCGAAAGGTCAAGCTTTATCTTCAGCAGGAAGTGTGGCTAGTAAGGAATTTGAAGGGGAGAAGGAATTCTTCAGTAATGGAGAATGGGAAGAAAGATTAGAGCAATGGAAAGCCAGGCAAAAAAAGAGAGGTATTCTTAACAAAGAGGAAGCCAAAGATGACCAGGGAGAAGATGATTACCTTTTGGCTGAAGCTAGGCAACCATTGTGGCGTAAGGTTCCAATATCTTCAAGTCTAATCAACCCATATCGCATAGTCATAATCATGAGGCTCTTTATCCTCGTTTTCTTCCTCCGTTTCCGTGTCTTAACTCCAGCATATGATGCATATCCACTGTGGCTTGCCTCTGTGATGTGTGAAGTATGGTTTGCACTGTCATGGATACTTGACCAGTTCCCCAAATGGTTCCCCATAACTCGTGAAACTTACTTGGATCGCTTGTCCATGAGGTTTGAGCGTGAAGGGGAGCCAAACCTTCTAGCCCCAGTTGATGTCTATGTGAGTACTGTGGACCCTTTGAAAGAGCCTCCCATTATAACAACAAACACTGTTCTTTCAATCCTGGCTGTTGATTACCCGGTTGACAAGGTGTGTTGCTATGTATCTGATGATGGTGCGTCTATGCTCCTTTTTGATGCACTTTCAGAAACTTCTGAGTTTGCACGAAGATGGGTTCCTTTTTGTAAGAAGTATAGCATAGAGCCAAGGGCACCGGAGTTCTATTTTTCTCAGAAGATTGATTACTTGAAAGATAAGGTGCAGCCTACCTTTGTGAAGGAACGAAGGGCCATGAAGAGAGAATATGAAGAATTTAAAGTAAAAATTAACTCCTTAGTGGCAAAAGCTCAGAAGAAGCCTGAGGACGGGTGGGTGATGCAGGATGGAACCCCTTGGCCTGGCAACAGTACTCGTGATCATCCAGGAATGATTCAGGTGTATTTAGGAAGTGGTGGTGCACTGGACGTAGAAGGCAAGGAACTGCCACGGCTGGTGTATATTTCACGTGAAAAGCGTCCTGGCTATAACCACCACAAGAAAGCTGGTGCTATGAATGCTTTGGTTCGAGTTTCAGCTGTGCTTTCAAATGCACCTTTCATGCTGAATCTGGATTGTGACCATTACATAAACAATAGCAAGGCTATAAGAGAGGCCATGTGCTTTTTAATGGACCCCCAGATAGGAAAGAAGCTCTGCTATGTCCAATTTCCACAAAGATTCGATGGTATTGATCGTCATGATAGATATGCTAATCGTAATATTGTATTCTTTGAT 4683 0.4358 MALNSMAASHSHFPSDSGQHRHPTRQSASKVCRVCSDQIGHGENGKLFVACNVCSFPVCQPCYEYERSEGNQCCPQCNTRYKRHKGCPRVAGDDEEHSDADDFHDPDEKHDANHWENKDHKEQQWHPKGQALSSAGSVASKEFEGEKEFFSNGEWEERLEQWKARQKKRGILNKEEAKDDQGEDDYLLAEARQPLWRKVPISSSLINPYRIVIIMRLFILVFFLRFRVLTPAYDAYPLWLASVMCEVWFALSWILDQFPKWFPITRETYLDRLSMRFEREGEPNLLAPVDVYVSTVDPLKEPPIITTNTVLSILAVDYPVDKVCCYVSDDGASMLLFDALSETSEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVKINSLVAKAQKKPEDGWVMQDGTPWPGNSTRDHPGMIQVYLGSGGALDVEGKELPRLVYISREKRPGYNHHKKAGAMNALVRVSAVLSNAPFMLNLDCDHYINNSKAIREAMCFLMDPQIGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMKALDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCGCSRKSKLKKKSGGRGGLFSRLYTRKKKMMGKNYVRKGSESMFDLDLEEIEEGREGYGELEKSSLMSQKKFEKRFGQSPVFIESTLMENGGLPEGTNSQSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRDAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGKLKWLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVSLEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKVFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPVLKXRHRPPTRQSASKVCRVCSDQIGHGENGKLFVACHVCSFPVCQPCYEYERSEGNQCCPQCNTRYKRHKGCPRVAGDDEEHSDADDFHDPDEKHDANHWENKDHKEQQWHPKGQALSSAGSVASKEFEGEKEFFSNGEWEERLEQWKARQKKRGILNKEEAKDDQGEDDYLLAEARQPLWRKVPISSSLINPYRIVIIMRLFILVFFLRFRVLTPAYDAYPLWLASVMCEVWFALSWILDQFPKWFPITRETYLDRLSMRFEREGEPNLLAPVDVYVSTVDPLKEPPIITTNTVLSILAVDYPVDKVCCYVSDDGASMLLFDALSETSEFARRWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVKINSLVAKAQKKPEDGWVMQDGTPWPGNSTRDHPGMIQVYLGSGGALDVEGKELPRLVYISREKRPGYNHHKKAGAMNALVRVSAVLSNAPFMLNLDCDHYINNSKAIREAMCFLMDPQIGKKLCYVQFPQRFDGIDRHDRYANRNIVFFD 1561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4062g00007 1561 CDD mRING-HC-C4C4_CesA 1041 1091 - -
Vium4062g00007 1561 SUPERFAMILY RING/U-box 1031 1112 - -
Vium4062g00007 1561 SUPERFAMILY RING/U-box 17 101 - -
Vium4062g00007 1561 Coils Coil 387 407 - -
Vium4062g00007 1561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 105 IPR013083 -
Vium4062g00007 1561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1028 1116 IPR013083 -
Vium4062g00007 1561 MobiDBLite consensus disorder prediction 88 131 - -
Vium4062g00007 1561 SUPERFAMILY Nucleotide-diphospho-sugar transferases 303 837 IPR029044 -
Vium4062g00007 1561 MobiDBLite consensus disorder prediction 88 126 - -
Vium4062g00007 1561 FunFam Cellulose synthase 406 580 - -
Vium4062g00007 1561 MobiDBLite consensus disorder prediction 1099 1142 - -
Vium4062g00007 1561 MobiDBLite consensus disorder prediction 1099 1137 - -
Vium4062g00007 1561 Pfam Cellulose synthase 289 1027 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vium4062g00007 1561 Pfam Cellulose synthase 1300 1561 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vium4062g00007 1561 CDD mRING-HC-C4C4_CesA 30 80 - -
Vium4062g00007 1561 Pfam Zinc-binding RING-finger 1034 1108 IPR027934 -
Vium4062g00007 1561 Pfam Zinc-binding RING-finger 23 97 IPR027934 -
Vium4062g00007 1561 Coils Coil 1398 1418 - -
Vium4062g00007 1561 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1203 1561 - -
Vium4062g00007 1561 FunFam Cellulose synthase 1027 1117 - -
Vium4062g00007 1561 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 414 581 IPR029044 -
Vium4062g00007 1561 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1425 1561 IPR029044 -
Vium4062g00007 1561 MobiDBLite consensus disorder prediction 1 23 - -
Vium4062g00007 1561 FunFam Cellulose synthase 15 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4062g00007 Vium-Chr4062 62637 70985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4062g00007 1034 1561 Cell Wall Biosynthesis AT5G17420 63.327 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4062g00007 K10999 - gmx:100780354 1899.79