Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4061g00019 ATGGTTTCTGCGGAGAATGATTCGCATTCCACTTCCGATCAAGCTACTCATAATCATTCCTCCGTTTCCGACAAAGCTCACAGAAGCATCGGCAAGTCCATGCGAACCGTGCGCTCCAAATTATTCCGACGCGACCACGCCACGTGCGTCTCCGATAGCCTAACCGATTCGCTCATGGAACTCGCCTCGCGAAACTCAAAGTCAGTTAAATCTTCCGTTACGGAGGAGCAACTTCTCGAGCTCTCTCAAGCTTTGAGCGATTTCTCTGCCTGCAGCAGCGATATCTCTGGAGAGCTCCAGAGGCTCGCCACCGTCTCCTCCTACGAACCTGCAGTTGACGGGGATCGCGAGCCCGAACCTGAGCCGGAGCCTTGCCTAGGGTTTCTCCAACGGGAGAGTTTCTCCACGGAGATAATCGAGAGTATCTCGCCGGAGGATCTTCAGCCCACGGTGAAGATCTGCGTCGACGGACTGCATTCTCCGTCGGTGGCGGTGAAGCGATCGGCGGCGGCGAAGCTGAGGCTCTTGGCGAAGAACAGAGCGGACAACCGCGCTCTGATTGGCGAGTCCGGTGCGGTGCCTGCTCTGGTTCCGTTGCTCCGGTGCAGCGATCCGTGGACGCAGGAGCACGCGGTCACGGCGTTGCTGAATCTGTCTCTTCTGGAGGAGAACAAGGCGCTGATAACGAATGCCGGTGCGGTGAAGTCGCTGATTTACGCGCTTAAAACAGGGACGGAGACTTCGAAGCAGAACGCGGCTTGCGCGCTGATGAGTCTTGCCTTGGTGGAGGAGAACAAGATCTCGATCGGTGCTTGCGGGGCGATACCGCCGCTGGTTTCGCTGCTACTGAATGGCTCCCACAGAGGGAAGAAGGACGCACTGACGACGCTGTATAAGCTGTGCTCGGTGCGGCAGAACAAAGAGAGGGCGGTGAGCGCGGGGGCAGTGAAGCCGCTGGTGGAGCTGGTGGCGGAGGAAGGGAGCGGGATGGCGGACAAGGCGATGGTGGTGCTAAACAGCTTGGCGGGGATTGAGGAGGGAAAAGAGGCGATCGTGGAAGAAGGTGGTATTGCTGCGCTTGTGGAGGCGATCGAAGATGGGTCGGTGAAGGGGAAGGAGTTCGCTGTTCTGACTCTTGTTCAGCTCTGTGCTCACAGTGTTAATAACAGAGGCTTGCTTGTGAGAGAGGGCGGGATTCCTCCTCTCGTTGCTCTTTCTCAGAACGGCTCTGTTCGAGCTAAGCACAAGGCTGAGACACTCCTTGGATATTTAAGAGAATCAAGACATGAAGCATCCTGTTCAAGTCCCTAG 1311 0.569 MVSAENDSHSTSDQATHNHSSVSDKAHRSIGKSMRTVRSKLFRRDHATCVSDSLTDSLMELASRNSKSVKSSVTEEQLLELSQALSDFSACSSDISGELQRLATVSSYEPAVDGDREPEPEPEPCLGFLQRESFSTEIIESISPEDLQPTVKICVDGLHSPSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLLEENKALITNAGAVKSLIYALKTGTETSKQNAACALMSLALVEENKISIGACGAIPPLVSLLLNGSHRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEEGSGMADKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLVQLCAHSVNNRGLLVREGGIPPLVALSQNGSVRAKHKAETLLGYLRESRHEASCSSP 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4061g00019 436 SUPERFAMILY ARM repeat 148 425 IPR016024 -
Vium4061g00019 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 273 315 IPR000225 GO:0005515
Vium4061g00019 436 PANTHER U BOX DOMAIN-CONTAINING 86 424 - -
Vium4061g00019 436 MobiDBLite consensus disorder prediction 1 38 - -
Vium4061g00019 436 FunFam U-box domain-containing protein 4 290 431 - -
Vium4061g00019 436 FunFam U-box domain-containing protein 4 137 289 - -
Vium4061g00019 436 Gene3D - 135 288 IPR011989 -
Vium4061g00019 436 Gene3D - 289 431 IPR011989 -
Vium4061g00019 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 233 IPR000225 GO:0005515
Vium4061g00019 436 SMART arm_5 221 261 IPR000225 GO:0005515
Vium4061g00019 436 SMART arm_5 344 384 IPR000225 GO:0005515
Vium4061g00019 436 SMART arm_5 386 426 IPR000225 GO:0005515
Vium4061g00019 436 SMART arm_5 180 220 IPR000225 GO:0005515
Vium4061g00019 436 SMART arm_5 262 302 IPR000225 GO:0005515
Vium4061g00019 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 356 IPR000225 GO:0005515
Vium4061g00019 436 Pfam Armadillo/beta-catenin-like repeat 182 219 IPR000225 GO:0005515
Vium4061g00019 436 Pfam Armadillo/beta-catenin-like repeat 264 302 IPR000225 GO:0005515
Vium4061g00019 436 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4061g00019 Vium-Chr4061 122284 126272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4061g00019 66 429 U-box Gene Family AT2G23140 44.357 3.18e-83 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4061g00019 - - gmx:100792402 684.871