Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4061g00016 ATGCAAACGTCTCAGAAACACGCAAGTTCGGCTGGTGTACACTTCTATCGCCACCAGCCTGTGCAAGGCATCTACCACGTTTTGCAGAGCGATCTATGCCACGATGCCCGTCATAGCAGCAGCCAGGAAACAAGCTTTTCTTTTGAAAGCTGCAAGGAGCAATACTTCACTCTGGAATCATGCCCTGCACCAACTACCGGTTTCACGGAGTGTGATGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGGAGTCCATTTTCTCCACAAGGTTCTCATTCGTGCTATTCAGATCACCACCAATCCTCTGACAACACCTATGGATCGCCAATAAGCGGTTTGTCTAGCGTTGACGATGGGCATGAACTGAAGCACAAACTCAGAGAACTGGAGATTTCATTGTTGGGGCTTGACGAATCGGACATCGAAGACAGTTTTGGCTGCTGCGTCAAGGGCAGCAGACTCGACGGAGCATCTCAGCTGGCTAAGCATGACTGGGAGCAGATTGCTGAAAATATTTCACGTTTTGACCTGAAAGGAGTCCTCAGGGTATGTGCGCAGGCCGTGTCTGATGAAGATGTTCCAACAGCAAGAGGGTGGATGGATAATGTATTGGGGAAAATGGTATCAGTCTCTGGAGATCCGATTCAGAGGTTGGGTGCTTACTTGTTGGAGGGGCTTAGAGCAAGGTTGGAATCATCAGGGCATCTCATCTACAAATCCTTGAAGTGTGAACAACCAACAAGCAAAGAACTGCTGAGTTACATGCACATCCTGTACCAGATTTGTCCATACTGGAAGTTTGCATACATATCTGCAAATGCTGTCATTACAGAAGCTATGGCTAACGAGTCCAGGATTCATATAATGGATTTCCAAATAGCACAGGGCACACAGTGGTATTTACTTATCCAGGCTCTTGCACATAGGCCTGGGGGACCCCCTTCCCTTCGCGTGACCGGTGTTGATGATTCGCATTCGATTCAAGCTCGAGGTGGAGGACTTGAGATTGTAGGAGAAAGGTTGTCAGAATTTGCGAGGTCTTGTGGAGTTCCGTTTGAATTTCACACTGCTGCAATGTCTGGCTGTGATGTTGTGCGAGGAAGTATTGAAATTAGACCCGGGGAAGCTCTGGCAGTAAATTTTCCTTTTGTTTTGCACCACATGGCAGATGAGAGCGTGAGCACCGAGAATCACAGAGATAGATTGTTGAGGTTGGTTAAGAGCTTATCTCCCAAGGTTGTCACCCTTGTGGAGCAAGAATCCAACACCAATACATCTCCTTTCTTTTACAGGTTTCTTGAGACCTTGGATTACTACACTGCCATGTTTGAATCCATTGATGTGGCCTGCCCCAGAGATGATCAGAAGCGCGTGAGCGCAGAGCAGCACTGTGTGGCACGAGACATTGTCAACATGATAGCCTGTGAGGGGGCTGAGAGAGTTGAAAGGCATGAACTTTTGGGAAAGTGGAGGTCGAGACTTTCCATGGCTGGATTTAAACAGTGCCAATTGAGCTCTTCTGTCATCGCTGCTACCCAAAATCTCCTAAAGGACTTCAGTAAAAATTATAGGCTTGAACATAAAGACGATGCCCTTTATCTTGGTTGGATGAACAGACACATGGCTACCTCTTCTGCTTGGAGGTGA 1650 0.4721 MQTSQKHASSAGVHFYRHQPVQGIYHVLQSDLCHDARHSSSQETSFSFESCKEQYFTLESCPAPTTGFTECDDSPSYASVSSKRSPFSPQGSHSCYSDHHQSSDNTYGSPISGLSSVDDGHELKHKLRELEISLLGLDESDIEDSFGCCVKGSRLDGASQLAKHDWEQIAENISRFDLKGVLRVCAQAVSDEDVPTARGWMDNVLGKMVSVSGDPIQRLGAYLLEGLRARLESSGHLIYKSLKCEQPTSKELLSYMHILYQICPYWKFAYISANAVITEAMANESRIHIMDFQIAQGTQWYLLIQALAHRPGGPPSLRVTGVDDSHSIQARGGGLEIVGERLSEFARSCGVPFEFHTAAMSGCDVVRGSIEIRPGEALAVNFPFVLHHMADESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFYRFLETLDYYTAMFESIDVACPRDDQKRVSAEQHCVARDIVNMIACEGAERVERHELLGKWRSRLSMAGFKQCQLSSSVIAATQNLLKDFSKNYRLEHKDDALYLGWMNRHMATSSAWR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4061g00016 549 Pfam GRAS domain family 181 549 IPR005202 -
Vium4061g00016 549 ProSiteProfiles GRAS family profile. 169 549 IPR005202 -
Vium4061g00016 549 MobiDBLite consensus disorder prediction 79 113 - -
Vium4061g00016 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 124 539 IPR005202 -
Vium4061g00016 549 MobiDBLite consensus disorder prediction 79 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4061g00016 Vium-Chr4061 105073 108120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4061g00016 1 549 GRAS Transcription Factor Family AT4G17230 58.909 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium4061g00016 GRAS 5.5e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4061g00016 - - gmx:100792931 971.074