Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4061g00007 ATGGGTGGTGATGAGGCTCGACAATCATTGCTTTCAGAACATTCCAATGAGAAAAATGACCTTCAAAGGAGAAAGCCTAGAGGTGGTGATGTCTTGGAGAAGGAGATCAAGATCAAAGGAGAAAATGATGAACAAAAGCCTTTGAATCCTCAACGTACAGATGTAAAACCACTAGCAGAATTCCATTTCAGGCCAGTGTTGTTATGGTTAGCTGCATACCTAGGGGGAGGAACTATTTGCTTCCTTCTCACACAGGATCAGATAAAGGGCATAAAAACAAATGGGTTTCTCGATGCCATTTACTTCTGTGTTGTAACAATGACAACAGTTGGATATGGAGATCTTGTGCCAGATAGCCAACTGTCAAAACTTCTTGCTTGCGTTTACGTCTTCACTGGAATGGCTCTTGTAGGGCTAATTCTTAGCAAGGCAGCAGATTATATTGTTGAAAAGCAGGAAATAATCTTAGTTAAAACCATATTCAAGGGTGAAAATATTGGTCCAGAACAGCTTTCCAAAGAGGTTGAAACCAACAAAGCTAAATACAAACTCATCCTCACAGCATCCATCTTTTTGGTGCTAATGATTGCGGGGACTATTTTTCTCTATTTTATTGAAAATCTAGATTTTGTTGATGCCTTTTATTGTGTTTGTTCCACAGTCACTACTTTAGGTTATGGTGATAAGAGCTTTTCCACCACTTTTGGTCGTGCTTTTGCTGTGTTCTGGATATTGAGCAGCACCATTTGCTTGGCTCAGTCTTTTGCTTATATTGCCGAACATTATACCGAAAAAAGACAAAGGTCCCTTGCAAAAAGGGTTCTTGCACGAAAATTGTCCCACCTTGATCTTGAGGCAGCTGATCTTGATGGAGATCATGTAGTCAGTGCTACAGAGTTCGTTTTGTATAAGCTGAAGGAAATGGGAAAGATCAGCCAAGATGATATTTTAGCTGTTCTGGATATTTTTAGACAACTAGATTTTGATCAATCAGGAACACTGACAGAAGCTGATCTCAGATATAACCCTGACTGA 1035 0.3971 MGGDEARQSLLSEHSNEKNDLQRRKPRGGDVLEKEIKIKGENDEQKPLNPQRTDVKPLAEFHFRPVLLWLAAYLGGGTICFLLTQDQIKGIKTNGFLDAIYFCVVTMTTVGYGDLVPDSQLSKLLACVYVFTGMALVGLILSKAADYIVEKQEIILVKTIFKGENIGPEQLSKEVETNKAKYKLILTASIFLVLMIAGTIFLYFIENLDFVDAFYCVCSTVTTLGYGDKSFSTTFGRAFAVFWILSSTICLAQSFAYIAEHYTEKRQRSLAKRVLARKLSHLDLEAADLDGDHVVSATEFVLYKLKEMGKISQDDILAVLDIFRQLDFDQSGTLTEADLRYNPD 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4061g00007 344 PRINTS Two pore domain K+ channel signature 105 133 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vium4061g00007 344 PRINTS Two pore domain K+ channel signature 222 231 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vium4061g00007 344 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 62 316 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vium4061g00007 344 SUPERFAMILY Voltage-gated potassium channels 60 150 - -
Vium4061g00007 344 SUPERFAMILY EF-hand 284 341 IPR011992 -
Vium4061g00007 344 FunFam Calcium-activated outward-rectifying potassium channel 1 60 155 - -
Vium4061g00007 344 Gene3D - 166 261 - -
Vium4061g00007 344 ProSitePatterns EF-hand calcium-binding domain. 327 339 IPR018247 -
Vium4061g00007 344 MobiDBLite consensus disorder prediction 1 51 - -
Vium4061g00007 344 FunFam Two-pore potassium channel 1 164 272 - -
Vium4061g00007 344 Pfam Ion channel 70 149 IPR013099 -
Vium4061g00007 344 Pfam Ion channel 190 260 IPR013099 -
Vium4061g00007 344 MobiDBLite consensus disorder prediction 10 50 - -
Vium4061g00007 344 Gene3D - 262 342 - -
Vium4061g00007 344 Gene3D - 55 160 - -
Vium4061g00007 344 SUPERFAMILY Voltage-gated potassium channels 177 284 - -
Vium4061g00007 344 ProSitePatterns EF-hand calcium-binding domain. 288 300 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4061g00007 Vium-Chr4061 61058 62340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4061g00007 44 339 Ion Channels AT5G55630 56.333 4.32e-120 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4061g00007 K05389 - gmx:100799492 549.28