Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium405g00012 ATGGCTTCATCTTTGGAAGAGCTTCTTGCAGAAGACGGGTTCAAAGGAATCAGAAGAGTGCCAAGGTCTAGATCTTCCTTCCACTATGGTGCTTCAAGTGAACCTCTTTACTCTATGGAAGGTAGACTTTGTGTATCAAGTGAAAGAATTCGACCGCAGAGACAAAAGTCTGATGCTTCAAGATATCAGATTACAAGTGGGCAGCAGAAAACCGACACTCATACTGCAAAGAACCGAAGATCAAGGGATAATGTTATTTTCAGAGGAGAAATGGATGAACGGTTGGAGGTTGAAGCCCAGAAGAACTCTTCTCGAGATACTGATTCAGGTGAAGAAGTTCATACCAAATCGTCAGAATACATGCCAAGGGATGAAATCACTGAGGTGATGGAACCAGAAGCTAGCAGATTTGAAGATACTTATTCAAAAGAAGTGTCTGCAAAAGGAGGCAAAGAAAAGAATATCTATGAACTCGTGGAGGACAAAAAATGGGCGGAAAAGCCTGCCAAGGATGCAAAGGTGCAAAGCAGAAGTTCCAGCATGCACATGCTTAGACATTTGAGCGAAACTGGAAAGAAAATAAATCCCCAGAAGAGCTTTGAATACAGCAGCAGGAACAAAAGTAGAAATCTTGCCGTGCAAGTAGCTTCTAGTCTTGCTCTTGATGAAGTAGCTGTTCAAGCCGTAGTTTCCATTCTAAATGGGTATATAAATCGTTTTCCAAAGGATGAGGATTTTCGGTCTACTTTGCATCATAGATGTTTCTCCTCCTTGAATTTTCTTGAATTGAAAGAAGAGAAAATTATTCAGAACAAAGTCATAAGAAGTCTTGAGCAAGCAATTGAGGCCATTGAACAATCCGTGGAGGAACCTGTATCTGCCATGTATCTGAAAAGAACAACGATGCAGCTTAGTATTATCACAGGTTTGGGTTTAAATGATTTGAAATACGATTGTACGTGTGGGATTCCGAATTATAAGTTGTCAGCATGTGCTCATCTTTACCTCAGTGTGGTCTACATGATTCAGAAAAAAAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCTCCCTTTCAGGCACGGACTATGTTGTTGCCTGAACTGTGGAAGCATCTATTTTCTCCACAACTTTCTCATTTGAAGGCATGGTACAAGAAGGAAGAAGGAGTTCTAGTAGACACACCAAACAAAACAAGAAGACTAAAACTTCTTCAAGAGGTGTATAATGAGCATTTGGATTCTGGAACTCATATATTTTCTGTATATTACAAAGATTGGCTTACTGAAGGAGTGGAATCTCCAACAGTTCCTTCAATTGGCATTCCATCAGTTTCTGTCTCAAGAAGTCAAGAGGGAAGTTCACTTGGTCACTCTTTTGAGTCTGCTAGCTCCATTGACCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTAGCTTTAGAAGACCAGGAGTTTACCAAGTCAAAGATGTTAAGGATGATGGTAACCAAGACAACTGCATGAAAGGCTCTTATGGTTCAACATTTGTTGAACAGACATTAACATATGAGTCTGAAACTGTTAAATTTACAGATCTAGATATTGAAGGTTTCTCTCAAGGTGTAGCTATTGATACAATCAAGCCTCACAAAGGAAATTCAATGGAAGCTGCAGAAGAAGTGCGGAAAAGGAATGTCAGTGATGAAATTAGTAACTCTTTCTCTATGCAAACTAATTTAACCAAGCACACTGTTGATGCCCTACCATACCAAAAAGCAAATGAACTTGGTCTTAAAAAGATAGCATATTCTATTAAATATTGGATTGTACATGAAAATATTGGTGCAGGATTAGATTTTCCAAGCACTCCACCGGAGTTTATTTGTTCTCTAACTGGAAATCTCTTTGAGGAACCGGTCACCCTAGAGACAGGTCAAACCTTTGAAAGAGAGGCCATCAAAGCATGGTTTGAAAAGGGAAATAGAACATGCCCGGTAACAGGAATTGCCTTGGAATGCGTGGCCATTCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGCGGTCAGATCGTTTTGATTGCCTTCTTGGTCTTGCTTCCAAAAGAGTGGAGAATTCAGAGGATCTCAAGTTGAAAGAAGGAGACGAGGCTGCTGTTTTCAAGTTAGAGAGTCTTTTCTCCTCTCTGAAAGAAGAGGAGAAATCAACTTATGTTAAGCATCTCATGTCTTTAGGATTTCTTCCATTTCTTTTTAGAAGGTTTGAACAGGGAAATGTGGAAGAAAAATCACAAGTGGTGTCACTTTTGCTAAATTGTATTCAAGTAGACTCTGGTTGCATATATAAGATAGCAAGGAATGTTAACAGAAAGTGTCTTCTCGAGCTTCTTCACAGCAAGGAGGTTACCCCAACAACAAATGCAATACTATTCCTTACTGAACTTTTATCAATGAAGAGGTGA 2478 0.3947 MASSLEELLAEDGFKGIRRVPRSRSSFHYGASSEPLYSMEGRLCVSSERIRPQRQKSDASRYQITSGQQKTDTHTAKNRRSRDNVIFRGEMDERLEVEAQKNSSRDTDSGEEVHTKSSEYMPRDEITEVMEPEASRFEDTYSKEVSAKGGKEKNIYELVEDKKWAEKPAKDAKVQSRSSSMHMLRHLSETGKKINPQKSFEYSSRNKSRNLAVQVASSLALDEVAVQAVVSILNGYINRFPKDEDFRSTLHHRCFSSLNFLELKEEKIIQNKVIRSLEQAIEAIEQSVEEPVSAMYLKRTTMQLSIITGLGLNDLKYDCTCGIPNYKLSACAHLYLSVVYMIQKKNKVSAKHLLQVFCDSPFQARTMLLPELWKHLFSPQLSHLKAWYKKEEGVLVDTPNKTRRLKLLQEVYNEHLDSGTHIFSVYYKDWLTEGVESPTVPSIGIPSVSVSRSQEGSSLGHSFESASSIDPFSPQPMVSKKLYDSMFGSFRRPGVYQVKDVKDDGNQDNCMKGSYGSTFVEQTLTYESETVKFTDLDIEGFSQGVAIDTIKPHKGNSMEAAEEVRKRNVSDEISNSFSMQTNLTKHTVDALPYQKANELGLKKIAYSIKYWIVHENIGAGLDFPSTPPEFICSLTGNLFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGIALECVAIPFTNLILKRLIDNWRSDRFDCLLGLASKRVENSEDLKLKEGDEAAVFKLESLFSSLKEEEKSTYVKHLMSLGFLPFLFRRFEQGNVEEKSQVVSLLLNCIQVDSGCIYKIARNVNRKCLLELLHSKEVTPTTNAILFLTELLSMKR 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium405g00012 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 698 IPR013083 -
Vium405g00012 825 MobiDBLite consensus disorder prediction 57 72 - -
Vium405g00012 825 CDD RING-Ubox_PUB 627 675 IPR045210 -
Vium405g00012 825 SUPERFAMILY RING/U-box 620 695 - -
Vium405g00012 825 SMART Ubox_2 629 693 IPR003613 GO:0004842|GO:0016567
Vium405g00012 825 MobiDBLite consensus disorder prediction 47 148 - -
Vium405g00012 825 PANTHER OS04G0584500 PROTEIN 1 606 - -
Vium405g00012 825 ProSiteProfiles U-box domain profile. 625 700 IPR003613 GO:0004842|GO:0016567
Vium405g00012 825 MobiDBLite consensus disorder prediction 73 148 - -
Vium405g00012 825 Pfam U-box domain 627 695 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium405g00012 Vium-Chr405 66501 69542 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium405g00012 625 823 U-box Gene Family AT5G37490 28.111 3.69e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium405g00012 - - vra:106758533 1358.97