Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium405g00009 ATGTCTATATATATAAATATATCAAAACCATGTTCACAATTCTCACACGCTCTTCCCTTCTTCGCCACCTTTCGCTTCTCGATTGCTTCCGCCATGTCACACTCTCTCCATTCCTCCGCTTTCAACACACCCAGATTGGTCCTCAAGAAGGTTCTCGCCAAATCTCAACACGAAGGTGACGGAGCTGTTGTTAGAAGAGGCATCGGAAGGACCGAGTTGAAGAACTTGGATCCCTTCCTCATGTTGGATCATTTCTCAGTCTCACCTCCGGCTGGATTTCCCGATCACCCACACAGAGGTTTTGAAACTGTCACCTACATGTTAGAGGGAGGTATTACTCACCAAGATTTTGCTGGCCACAAGGGTACAATCAGAGCTGGTGATGTTCAGTGGATGACTGCAGGTAGGGGAATAATTCACTCCGAAATGCCCGCAGAAGCAAACAACAAGGGATTGCAATTATGGATCAATTTATCCTCCAGAGACAAAATGATCGAGCCCAACTACCAAGAACTTCCGAGTGAGAGCATTCCAACAGCAGAAAGAGATGGGGTTGAAGTGAGAGTGATAGCAGGAGAATCAATGGGAGTGCAATCCCCCGTGTACACACGAACTCCAACCATGTTTCTTGTTTTCTCCATGATGCCAGGAAGTGAGTGGCATCAGAGCATTCCAGAGTCATGGAATTGCTTTGTTTATGTGATTGAAGGAGAAGGGGTTTTCGGGGGTACGAGTTCATCCCCATGTGTGGCACACCATGTGCTTGTTCTTAGTCTAGGTGATGGCCTTAGCGTATGGAACAACTCTTCAAAGCCTCTGAGGTTTGTTGTGATAGGAGGACAACCACTGAACGAGCCAGTGGCTCAGTATGGGCCTTTTGTGATGAACACACAGTCTGAGATTGAGAAAACCCTTGAAGACTACCAATATGGGAGGAATGGTTTTGAGATGAGGAAGTATTGGAGGTCTCAATAG 975 0.4656 MSIYINISKPCSQFSHALPFFATFRFSIASAMSHSLHSSAFNTPRLVLKKVLAKSQHEGDGAVVRRGIGRTELKNLDPFLMLDHFSVSPPAGFPDHPHRGFETVTYMLEGGITHQDFAGHKGTIRAGDVQWMTAGRGIIHSEMPAEANNKGLQLWINLSSRDKMIEPNYQELPSESIPTAERDGVEVRVIAGESMGVQSPVYTRTPTMFLVFSMMPGSEWHQSIPESWNCFVYVIEGEGVFGGTSSSPCVAHHVLVLSLGDGLSVWNNSSKPLRFVVIGGQPLNEPVAQYGPFVMNTQSEIEKTLEDYQYGRNGFEMRKYWRSQ 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium405g00009 324 CDD cupin_pirin_C 206 282 - -
Vium405g00009 324 Gene3D Jelly Rolls 178 283 IPR014710 -
Vium405g00009 324 PANTHER PIRIN-RELATED 32 324 IPR012093 -
Vium405g00009 324 Pfam Pirin 65 156 IPR003829 -
Vium405g00009 324 PIRSF Pirin 43 322 IPR012093 -
Vium405g00009 324 Pfam Pirin C-terminal cupin domain 210 314 IPR008778 -
Vium405g00009 324 FunFam pirin 58 190 - -
Vium405g00009 324 SUPERFAMILY RmlC-like cupins 45 322 IPR011051 -
Vium405g00009 324 CDD cupin_pirin_N 62 158 - -
Vium405g00009 324 Gene3D Jelly Rolls 58 309 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium405g00009 Vium-Chr405 46107 47943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium405g00009 42 319 Calmodulin-binding Proteins AT3G59220 65.000 1.21e-133 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium405g00009 K06911 - gmx:100775597 538.11