Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4057g00003 ATGATGCCAAGTGTTAAGCCTGATGTATTGGAGAGAGAGTCAGAGCCATTTGTTGAAATTGATCCAACAAGAAGATATGGCAGATACAATGAACTGCTGGGATGTGGTGCTGTGAAAAAGGTGTACAGGGCATTTGATCAGGAAGAGGGGATAGAGGTGGCATGGAACCAAGTGAAACTGAGGAACTTCAGTAACGATCCTGCAATGGTGGAAAGGCTTTACTCTGAGGTGAGATTGCTCAGAAGCTTGACCAACAAAAACATCATCTCCCTTTACAGCGTTTGGAGGGATGAGAAGCACAACACTTTGAACTTCATCACTGAGGTCTGCACCAGTGGGAATCTGAGGGAGTACAGAAAGAAACACAGGCATGTGTCCATGAGAGCCTTGAAAAAGTGGTCCAAGCAGATTTTGGAAGGGTTGAATTACTTGCATGTTCATGACCCTTGTATCATCCACAGAGACCTCAACTGCAGCAATGTCTTTGTCAATGGGAACACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCAATTGTGGGGAAAAGCCACTCTGCACATTCAGTTCTAGGGACACCAGAATTCATGGCACCTGAGTTGTATGATGAAGACTACACTGAAATGGTTGACATATACTCATTTGGAATGTGTGTGTTAGAGATGGTAACACTAGAGATTCCTTACAGTGAATGTGACAATGTTGCTAAGATATACAAGAAGGTGTCATCAGGTGTGAGACCTCAAGCCCTGAATAAGATCCAAGATCCTGAAGTGAAGGCCTTCATTGAGAGGTGTCTTGCTCAGCCAAGGGCTAGACCTTCTGCTGCAGAGTTGCTCAAGGACCCCTTCTTTGATTTGCTTGATTTTGATGAAGATGTTGACTCTAATACTTCATGA 900 0.4433 MMPSVKPDVLERESEPFVEIDPTRRYGRYNELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFSNDPAMVERLYSEVRLLRSLTNKNIISLYSVWRDEKHNTLNFITEVCTSGNLREYRKKHRHVSMRALKKWSKQILEGLNYLHVHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKSHSAHSVLGTPEFMAPELYDEDYTEMVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGVRPQALNKIQDPEVKAFIERCLAQPRARPSAAELLKDPFFDLLDFDEDVDSNTS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4057g00003 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 286 - -
Vium4057g00003 299 CDD STKc_WNK 25 285 - -
Vium4057g00003 299 Gene3D Transferase(Phosphotransferase) domain 1 110 288 - -
Vium4057g00003 299 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4057g00003 299 SUPERFAMILY Protein kinase-like (PK-like) 20 286 IPR011009 -
Vium4057g00003 299 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Vium4057g00003 299 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Vium4057g00003 299 PIRSF TyrPK_CSF1-R 27 129 - -
Vium4057g00003 299 PIRSF TyrPK_CSF1-R 117 282 - -
Vium4057g00003 299 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4057g00003 299 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4057g00003 Vium-Chr4057 32186 34088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4057g00003 11 286 MAP Kinase Kinase Kinase AT5G55560 83.696 0.0 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium4057g00003 Pkinase 1.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4057g00003 K08867 - gmx:100818126 544.658