Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4057g00002 ATGGAGGCCAGGGTCTCTTCCTCTCTGGGCCTCCCTTCTCCGAAGCCTCACGAAATCTCAATCTCCACAAGCCTCTCCGACTTCCCCTCCCTCCTCACCCATTTCCCCCCTTTCGCCTCCACCACCTCCGTCAAATGGCCCCGGCCCAACCCAAAACCCCAGCCCCTCAAATCCCTCCCTCTCCTTGATCGCGCCTTAATCGGCGCCGCCGCAGGAGGCCTCGCTGGCGCCTTTACCTACGTCTGCCTCCTCCCCCTCGACACCATCAAAACCAAGATGCAGACCAAAGGTGCTGCCCGAATTTACAAAAACGCCCTCGACGCAGTCGTGAAAACGTTCCAGTCCAGCGGCCTCCTCGGCTTCTACAGCGGCATCTCAGCCGTCATAGTCGGCTCAACCGCCTCATCCGCCGTCTACTTCGGCACCTGCGAGTTCGGCAAATCGTTCCTTGGCAAACTCGAAAACTTCCCTGCCGTACTGATCCCTCCCACCGCAGGTGCCATGGGGAACATTGCCTCATCGGCGATCATGGTACCCAAGGAGCTCATCACGCAGCGAATGCAAGCTGGCGCGAAGGGACGCTCCTGGCAAGTCCTTGTGGAAATTCTCCAAAACGACGGCGTTATGGGCCTCTATGCTGGATACTCTGCGACATTGCTCCGAAACCTACCGGCAGGGGTTCTGAGTTATTCTTCTTTTGAGTATCTGAAAGCTGCGGTGCTTCAGAAAACGGAGAAGAACAATTTGGAACCGGTTCAGAGCGTTCTGTGTGGGGCACTCGCGGGGGCGATTTCAGCGTCCGTTACAACACCGTTGGACGTGGTGAAGACACGGTTGATGACGCAGGTTCGCGGCGAGGGGGTGAATAAGGTTGCGGCGGTTATGTACGACGGCGTTTCGTCGACGGTGAAGCAAATTTTGAAGGAGGAAGGGTGGGTGGGGCTGACACGTGGCATGGGACCTAGGGTGCTTCACAGCGCGTGCTTTTCCGCGTTGGGTTACTTCGCTTTTGAGACGGCGAGGCTTGGGATTTTGCGAGAGTATCTTAGGAGGAAGGAGTTGAGGGAAAGGGAAACTCAAGTTTCTGTTTCCACTGCCTGA 1101 0.5704 MEARVSSSLGLPSPKPHEISISTSLSDFPSLLTHFPPFASTTSVKWPRPNPKPQPLKSLPLLDRALIGAAAGGLAGAFTYVCLLPLDTIKTKMQTKGAARIYKNALDAVVKTFQSSGLLGFYSGISAVIVGSTASSAVYFGTCEFGKSFLGKLENFPAVLIPPTAGAMGNIASSAIMVPKELITQRMQAGAKGRSWQVLVEILQNDGVMGLYAGYSATLLRNLPAGVLSYSSFEYLKAAVLQKTEKNNLEPVQSVLCGALAGAISASVTTPLDVVKTRLMTQVRGEGVNKVAAVMYDGVSSTVKQILKEEGWVGLTRGMGPRVLHSACFSALGYFAFETARLGILREYLRRKELRERETQVSVSTA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4057g00002 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 343 IPR018108 -
Vium4057g00002 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 157 239 IPR018108 -
Vium4057g00002 366 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 64 358 - -
Vium4057g00002 366 Pfam Mitochondrial carrier protein 249 341 IPR018108 -
Vium4057g00002 366 Pfam Mitochondrial carrier protein 164 242 IPR018108 -
Vium4057g00002 366 Pfam Mitochondrial carrier protein 69 152 IPR018108 -
Vium4057g00002 366 SUPERFAMILY Mitochondrial carrier 66 338 IPR023395 -
Vium4057g00002 366 Gene3D Mitochondrial carrier domain 20 193 IPR023395 -
Vium4057g00002 366 FunFam Protein MITOFERRINLIKE 1, chloroplastic 38 194 - -
Vium4057g00002 366 ProSiteProfiles Solute carrier (Solcar) repeat profile. 63 149 IPR018108 -
Vium4057g00002 366 Gene3D Mitochondrial carrier domain 194 365 IPR023395 -
Vium4057g00002 366 FunFam protein MITOFERRINLIKE 1, chloroplastic 195 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4057g00002 Vium-Chr4057 14981 16469 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4057g00002 157 349 Chloroplast and Mitochondria Gene Families AT2G30160 27.700 7.67e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4057g00002 K15111 - gmx:100805903 573.163