Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4056g00001 ATGTTGATATTTAGACACGTATCATCTTTTGATGTCATAGAAGAGGAAAAAGCATGCATCTCTGCAATGCAGCATTGCTTTGGTTCAATATATTCTGCAGTTTTGAATGCATCGATTGAGCTAAACTTGTTTGAGATCATAGCAAAGGCATCTCCAACAGGAGTTGGTGTGACAGCGTCTGATGTTGCCTCTCAACTTCCAACACAGCACCCAGAATTGGCTCGCAGGATTGATCGCATGTTGTCTCTGCTTGTTACTCATTCTCTTCTCACTTGTTCAACTCGCACAAACGAAAATGGTGAACCTCAGAGGTTATACCATCTTTCTCATGTTGGTCACTACTTCGTCAAAGATCACAGCAAGGGCTCTCTGGCTCCCCTATCAACTTTTCTTAGTCACCCTTCCATCGTCCATGTCTTGCTGAACTACAAGGAGGCACTTTTGGACTTTGAGAAGGGCTTGTACCAGAAGGTTCATGGAGTGCCTATTTATGAAGGCATATGCTCGGATCCCACACTGAGTAATATTTTTAATGAAGCAATGAGTAATCTTGGCACAATCGAGATTAAGAAGATTATAGAAATGTATAGAGGATTTGATAAAATATCTTTGCTAGTTGATGTGGGTGGTGGCATTGGCCAAAATCTTAATATGATAATCTCCAATTATCCTTCTATTAAGGGCATTAATTTTGATTTGCCTCATGTTATACAAAATGCTCCCATTTATTCAGGGATAAAGCAAGTTGAAGGAAACATGTTTGAAAGTGTTCCAGAAGGTGATGCAATAATATTAAAGGCAGTATTACACAATTGGTCGGATGAAAAATGTGTAGAAATTTTAAAGAATTGCTACAAAGCTTTGCCAGAAAAGGGAAAGGTAATTGTTATGGAGATGATAATGCCTGAAGCAATTGACTCAACAGATGCAGATAAAATGGTCACTGGCTTTGACAACCTTATGTTTTTGGATGCTGGCACTGAAAGAACTGAGAAAGAATTTCATAATTTATCCAAACTCTCAGGATTTTCTCATTTTCAGCTTGTTTGTCGTGTCTTCTCAGCTTTGGGAGTTATAGAATTTCATAAGTGA 1092 0.3855 MLIFRHVSSFDVIEEEKACISAMQHCFGSIYSAVLNASIELNLFEIIAKASPTGVGVTASDVASQLPTQHPELARRIDRMLSLLVTHSLLTCSTRTNENGEPQRLYHLSHVGHYFVKDHSKGSLAPLSTFLSHPSIVHVLLNYKEALLDFEKGLYQKVHGVPIYEGICSDPTLSNIFNEAMSNLGTIEIKKIIEMYRGFDKISLLVDVGGGIGQNLNMIISNYPSIKGINFDLPHVIQNAPIYSGIKQVEGNMFESVPEGDAIILKAVLHNWSDEKCVEILKNCYKALPEKGKVIVMEMIMPEAIDSTDADKMVTGFDNLMFLDAGTERTEKEFHNLSKLSGFSHFQLVCRVFSALGVIEFHK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4056g00001 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 352 IPR029063 -
Vium4056g00001 363 PIRSF O-mtase 5 363 IPR016461 GO:0008168
Vium4056g00001 363 Gene3D - 30 192 IPR036388 -
Vium4056g00001 363 Pfam O-methyltransferase domain 151 344 IPR001077 GO:0008171
Vium4056g00001 363 PANTHER O-METHYLTRANSFERASE 27 343 IPR016461 GO:0008168
Vium4056g00001 363 FunFam Caffeic acid 3-O-methyltransferase 4 115 - -
Vium4056g00001 363 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
Vium4056g00001 363 SUPERFAMILY "Winged helix" DNA-binding domain 14 119 IPR036390 -
Vium4056g00001 363 Gene3D Vaccinia Virus protein VP39 174 352 IPR029063 -
Vium4056g00001 363 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 23 363 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4056g00001 Vium-Chr4056 21761 27000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4056g00001 13 363 Monolignol Biosynthesis Gene Families AT5G54160 43.785 4.19e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4056g00001 - - mtr:11418328 466.848