Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4055g00001 ATGGAAGCAGCACTCAGCAACAACACCATTTCTGCAGGGTCAGCTCCACCACCATCTGGGCTGTCTCAGCCAATGAACATGAATGTTAACATGAACATGAACGTGGGAAACGGCGAAGGAACAACCACGCCAGCAGCTCCGCCAGCACCAGCGTCAACACCAACAACGTTGGTTCCTGCAGTGCCAGCTGCAACGACGACAACAACATTGGTAACAACAACGCCAGGAAGCACTGGGAGCCAAGGGAGTTTTGACTTGTTTGGGAAGAAGAAGAGAGGGAGGCCGAGAAAGTATGATGCAGATGGGAACCTGAGGGTGAGTGCAACCCCGACACCAGCTCCACCGGGTTTCACTTTGTCCACACCTTCTGAGTTCTCTAACAAAAGGGGCCGTGGCAAACACACAGCTTTTGGCAACTACCAACTCTTTTCTTCTTTTGGTGAGGTGTTCGCAAACACAGCTGCTGGTGATTTCATACCGCATGTGGTGACTGTTTACACTGGAGAGGATGTTGCTGGAAAGATCTTGTCATTTGCTCAGAAGGGTCCAAGAGGAATCTGTATTCTCTCTGCCAATGGAGCTATCTCAAATGTCACCATACGCCAACCCGGCTCTTCTGGTGGCATATTGACTTACGAGGGTCGATTTGAGATTTTATCTTTGTCTGGATCATTCACTGTTGCTGACAACAGTGGCATGAAAAGTCGAACTGGTGGATTGAGTGTCTCACTTGCTGGCCCTGATGGTCGAGTGATAGGAGGTGGTGTTGCTGGACTTTTAACAGCTGCTGGTCCCATCCAAATTGTAGTAGGAAGTTTCACGCAAAATGCACAGAAGAGCCAAAAGAAGAAGTATCAACGTGAACAACAGCCAGTGGTGTCCCCTACTTCAGCTGTTCCAGAAACTGTGACATTTGCTAGACCTATCTCACAAGCAAATGCTGATCAAGGTGAAAACTTTTTGATGCCCATGTCTCAGATACCAGATCAAACCCAGAGAGAATCTGTCAGTGTTTCAAGTGACAAACAGAACCTAGATGCTACACTTGATGCTGCTACTTGGAATGGTTCTGAGGAATATTCAGACCAGAGGACATCCCCAGACATCAACATATCTTTGCCAGATGAATAG 1131 0.4792 MEAALSNNTISAGSAPPPSGLSQPMNMNVNMNMNVGNGEGTTTPAAPPAPASTPTTLVPAVPAATTTTTLVTTTPGSTGSQGSFDLFGKKKRGRPRKYDADGNLRVSATPTPAPPGFTLSTPSEFSNKRGRGKHTAFGNYQLFSSFGEVFANTAAGDFIPHVVTVYTGEDVAGKILSFAQKGPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTVADNSGMKSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFTQNAQKSQKKKYQREQQPVVSPTSAVPETVTFARPISQANADQGENFLMPMSQIPDQTQRESVSVSSDKQNLDATLDAATWNGSEEYSDQRTSPDINISLPDE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4055g00001 376 CDD DUF296 160 273 IPR005175 -
Vium4055g00001 376 MobiDBLite consensus disorder prediction 58 84 - -
Vium4055g00001 376 MobiDBLite consensus disorder prediction 1 130 - -
Vium4055g00001 376 MobiDBLite consensus disorder prediction 1 41 - -
Vium4055g00001 376 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 56 343 IPR039605 GO:0003680
Vium4055g00001 376 MobiDBLite consensus disorder prediction 325 376 - -
Vium4055g00001 376 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 279 - -
Vium4055g00001 376 MobiDBLite consensus disorder prediction 280 299 - -
Vium4055g00001 376 MobiDBLite consensus disorder prediction 87 101 - -
Vium4055g00001 376 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 274 IPR005175 -
Vium4055g00001 376 Gene3D - 160 291 - -
Vium4055g00001 376 ProSiteProfiles PPC domain profile profile. 155 296 IPR005175 -
Vium4055g00001 376 MobiDBLite consensus disorder prediction 325 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4055g00001 Vium-Chr4055 22816 27043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4055g00001 89 344 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 49.259 1.14e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4055g00001 - - gmx:100779227 509.605