Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4054g00001 ATGGGACAATGTTTGAGCTTCTGCTGCTTTAAGCACACAGCTTCGTCTCAGCGACAGTATCCAACTGTGATAGAAGAGCTATGCCCTCAATTTTCTCTAGCCGATCTTAGGAAATGGACAAACAACTTTGACGAAAACCAAATAATTGGAATTGGAGGCCTTGGCGTTGTATATAAAGGCTCTCTCCGAAACAGTTGTGCTACTGAGTGTACAATTGCAATCAAGCGAATACACGCGATTACTGAGAAGGAACTTAAGCAGTTCAAGAACGAAATTGAGTTGCTCTGCCAGCTTCGCCATCCAAATTTGGTCACTCTGTTAGGATTTTGTGACCACAGAGACGAGAAGAATATTGTATATGAGTACATGATAAATGGATCTCTCC 385 0.4208 MGQCLSFCCFKHTASSQRQYPTVIEELCPQFSLADLRKWTNNFDENQIIGIGGLGVVYKGSLRNSCATECTIAIKRIHAITEKELKQFKNEIELLCQLRHPNLVTLLGFCDHRDEKNIVYEYMINGSL 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4054g00001 128 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 128 - -
Vium4054g00001 128 ProSiteProfiles Protein kinase domain profile. 43 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4054g00001 128 FunFam Receptor-like protein kinase ANXUR2 8 122 - -
Vium4054g00001 128 Gene3D Phosphorylase Kinase; domain 1 5 122 - -
Vium4054g00001 128 SUPERFAMILY Protein kinase-like (PK-like) 18 128 IPR011009 -
Vium4054g00001 128 Pfam Protein tyrosine and serine/threonine kinase 46 128 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4054g00001 Vium-Chr4054 1240 1624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4054g00001 7 128 Receptor kinase-like Gene Family AT5G39000 37.097 1.79e-25 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium4054g00001 PK_Tyr_Ser-Thr 3.6e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4054g00001 - - vum:124836543 269.626