Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4053g00001 ATGTCCCTTGATTCCGAAGCAAATCTTTCTTCCATGGAACCAACTTGTGTCGACACTTCTCTCAACCTTAACGTTATTCCCTCTTCACACACGGACATCGCGGGAGAAGTTTTGGTTGAAGAGTTGCGGCGTCTAAACAGTGAGAACAAGATGCTAACTGCGACGCTGAACCACGTATACGAGAACTATCTTGCTTTGCAGAAACAGTTGAGTGAGTTCAACAGACTGAAGAAAGCAAATTTTGACAAAGAAGAAACAGCATCGCTGAAAAGAAAGGTTGACAGTGAGAATTGCGCGAATCTGTTTTGCGTCAACGCCCTCACAGAGTGCAGCAGTGAGGAAGAGACGTTCAAAAAGCCTAAGCAAAGTACCAACCCAAAGGTTCACAAAGTTTTTGTACGGACAGATGCATCTGATACCAGCTTGTATGTGAGGGACGGATATCAGTGGAGAAAATATGGTCAAAAAGTGACCAGAGATAACCCTTCTCCTAGGGCTTACTTCAAGTGTTCCTATGCTCCGGGCTGTCCAGTGAAGAAGAAGGTGCAGAGAAGCGTGGAGGATCGAAGTGTGTTGGTGACAACGTACGAAGGAGAACACAACCATGGTGAACATCAAACGGAGACATCGGGGAATTCAGGGAAAAGTGAAAGTGGGGAAGCGCTAGAATTGGTCCAGTCAAGAGTGGTTGACATGAATGGGCAAAAGTCATTGATCCAGCAGTTTTTGGTTCAACAAATGGCTACATCTTTGACCAGAGATCCTAATTTCACTGCAGCACTTGCTTCTGCCATCTCGGGAAATCTACATCATACTTCTACGCCAAAACGTTGA 834 0.4532 MSLDSEANLSSMEPTCVDTSLNLNVIPSSHTDIAGEVLVEELRRLNSENKMLTATLNHVYENYLALQKQLSEFNRLKKANFDKEETASLKRKVDSENCANLFCVNALTECSSEEETFKKPKQSTNPKVHKVFVRTDASDTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSYAPGCPVKKKVQRSVEDRSVLVTTYEGEHNHGEHQTETSGNSGKSESGEALELVQSRVVDMNGQKSLIQQFLVQQMATSLTRDPNFTAALASAISGNLHHTSTPKR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4053g00001 277 ProSiteProfiles WRKY domain profile. 146 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4053g00001 277 Gene3D WRKY domain 126 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4053g00001 277 FunFam WRKY transcription factor 40 129 206 - -
Vium4053g00001 277 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 234 269 IPR044810 GO:0003700
Vium4053g00001 277 Pfam WRKY DNA -binding domain 146 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4053g00001 277 SUPERFAMILY WRKY DNA-binding domain 141 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium4053g00001 277 SMART WRKY_cls 144 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium4053g00001 277 MobiDBLite consensus disorder prediction 196 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4053g00001 Vium-Chr4053 12448 13844 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4053g00001 17 271 WRKY Transcription Factor Family AT1G80840 44.330 3.63e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium4053g00001 WRKY 5.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4053g00001 - - gmx:100127373 367.466