Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4047g00008 ATGGCCATGGACAATTCTCCTTCAGCTGCTGAAAACATGCCCAATTATCGTGTTAATCACTGGAGGCAAGATGAGGATCAAAAGCTAACCCAACTTGTTCAAGAACATGGTCCCCAAGACTGGAATGTAATTGCTCAACATATACAAGGACGAACTGGGAAAAGTTGCAGATTAAGGTGGCGCAATCATCTTGATCCTGGTGTTAACAGAAACTCTTTCACGAAAGAAGAAGAAGAGAGGCTAATTGCAGCTCGAGAGGTTTATGGAGCAAAATGGGCAACCATAGCCAAACTGTTCGAGGGGAGAACCGACAATGCCTTGAAAAACCATTGGCACGTTTTGATCGCACGAAAGCGAAAGGAAGGCAACAATGGAAGTTTGCAAGAGCTGATGAACGGTTCAAGTTCTTCCTCTTCTCACGATGACGCATTGTTTGACATGATGAACTTCAACGCTACACAAAGGGCACTTGCACCGGTGTGTCCCAGTGATTCGTTGAGCCCTATGAACTTTGGATCTGTGCCATCCTTCTCCGACTCTTTTCCTGGGAAGGAAGAGAGTGATCCTTTTGGGCTGTTGAATCCTGCTGCTACTTCTGGCGGAATGATGAAAAAGGGCTTGTTTCATAGCTCATCATCGGCATTCACTAAATTTAAGGGTTCTTCTTCCTCGGACAGAAATGAACCACATGACGCTGGATTCAAGGATGGTACTTTCTATGATTTTCTTGGTGTCGGTGCTGATGATGAGTGA 753 0.4515 MAMDNSPSAAENMPNYRVNHWRQDEDQKLTQLVQEHGPQDWNVIAQHIQGRTGKSCRLRWRNHLDPGVNRNSFTKEEEERLIAAREVYGAKWATIAKLFEGRTDNALKNHWHVLIARKRKEGNNGSLQELMNGSSSSSSHDDALFDMMNFNATQRALAPVCPSDSLSPMNFGSVPSFSDSFPGKEESDPFGLLNPAATSGGMMKKGLFHSSSSAFTKFKGSSSSDRNEPHDAGFKDGTFYDFLGVGADDE 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4047g00008 250 CDD SANT 21 64 IPR001005 -
Vium4047g00008 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 68 IPR017930 -
Vium4047g00008 250 SMART sant 17 66 IPR001005 -
Vium4047g00008 250 SMART sant 69 117 IPR001005 -
Vium4047g00008 250 Gene3D - 71 143 - -
Vium4047g00008 250 CDD SANT 72 115 IPR001005 -
Vium4047g00008 250 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Vium4047g00008 250 FunFam MYB transcription factor 19 69 - -
Vium4047g00008 250 Gene3D - 19 69 - -
Vium4047g00008 250 Pfam Myb-like DNA-binding domain 21 81 - -
Vium4047g00008 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Vium4047g00008 250 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Vium4047g00008 250 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Vium4047g00008 250 PANTHER MYB PROTEIN-RELATED 20 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4047g00008 Vium-Chr4047 131159 133066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4047g00008 20 147 MYB Transcription Factor Family AT3G29020 57.812 3.59e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium4047g00008 Myb_DNA-bind_6 1.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4047g00008 K09422 - gmx:102660725 231.106