Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4047g00003 ATGTGCGAAGCGCTAAAGACGCAATATCAGGTAAACGAGGAGATCGGTCGTGGACGCTTCGGAACCATCTTCCGCTGTTTCCACCCTCTCTCCAACGAACCCTACACCTGCAAGGTCACCGACAAGTCTCTTATCGCTGATTCCACCGACCGTGAGTGTCTCCAGAATGAACCAAAATTCATGACCCTTCTCTCTCCTCACCCTAACATCCTTCAAATCTTCGATGTCTTTGAGGACGACAATTATCTCTCCATCGTCATGGACCTCTGCCAACCCCACATGCTCTTCGGCCGCATCGTTAACGACCCCATTTCCGAGACCCAGGAGACCGTCCTCATCAAGAGCCTTCTCGAAGGCTTGGCCCACTGCCATCACATGGGCGTGGCCCACTGCCATAACATGGTCGTGGCCCACTGCGACATCAAGCCCGACAATGTTCTCTTCGACTCCGTAGATAATCTCTTTGCCAGCAACATCATCGAGAAAAAGTAA 492 0.5203 MCEALKTQYQVNEEIGRGRFGTIFRCFHPLSNEPYTCKVTDKSLIADSTDRECLQNEPKFMTLLSPHPNILQIFDVFEDDNYLSIVMDLCQPHMLFGRIVNDPISETQETVLIKSLLEGLAHCHHMGVAHCHNMVVAHCDIKPDNVLFDSVDNLFASNIIEKK 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4047g00003 163 Gene3D Transferase(Phosphotransferase) domain 1 2 157 - -
Vium4047g00003 163 SMART serkin_6 9 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4047g00003 163 ProSiteProfiles Protein kinase domain profile. 9 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4047g00003 163 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 91 - -
Vium4047g00003 163 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 152 - -
Vium4047g00003 163 SUPERFAMILY Protein kinase-like (PK-like) 7 150 IPR011009 -
Vium4047g00003 163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Vium4047g00003 163 Pfam Protein kinase domain 9 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4047g00003 Vium-Chr4047 40356 41129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4047g00003 9 148 EF-hand Containing Proteins AT5G19450 36.170 1.09e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium4047g00003 Pkinase 1.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4047g00003 - K08794 vum:124836522 343.199