Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4042g00005 ATGTTCAAATTCCTCAAAGAGGTCGTTGGTGGATCTGGAACCGGCGTCAAGGATCTACCGTATAACATAGCCGAACCTTTCCCTTCCGCCTGGGGCTCCTGGACTCACTCTCGCGGCACCTCCAAGGATGACGGTTCTCCTGTCTCTGTCTTTTCTCTCTCTGGCTCTAATGCTCAGGACGGCCACTTAGCTGCTGCGCGCAACGGCGTCAAGCGTCTTCGAACTGTTAGGCATCCGAATATATTGTCGTTTCTTCACAGCGCTGAGATTGAGACTTACGATGCAGGTTCGCCGAAGGTTACGATATATATTGTGACTGAACCTGTGATGCCGCTGTCTGAGAAAATCAAGGAGTTAGGGCTTGAAGGTACACAAAGGGATGAATATTATGCTTTGGGTCTTCATCAAATAGCTAAAGCTGTGAGCTTCTTGAATAATGATTGTAAACTTATTCACGGTAATGTTTGCTTGGCTAGTGTTGTTGTTACACCGACTTTGGACTGGAAGCTTCACGCTTTCGATGTTCTATCTGAGTTTGATGGGAGCAATGAAACATCTTCTGGTCAAATGCTGCAATATGCATGGCTTGTTGGATCACAGTACAAACCAATGGAGTTGGCAAAATCAGACTGGGATGCAATTAAGAAGTCTCCTCCATGGGCCATTGATTCCTGGGGCATGGGCTGCTTAATTCATGAGGTGTTCTCTGGTCTAAGGTTGAGCAAGACAGAGGAGTTACGCAACACTGGTTCCATCCCCAAGTCTCTGCTTCCAGATTATCAACGATTATTGAGTTCCATGCCCTCTCGTAGATTAAACTCATCAAAGCTTATAGAAAACAGCGAATATTTTCAAAATAAGCTGGTAGACACTATACATTTCATGGAAATTCTCAGTTTAAAAGATAGTGTGGAGAGAGACACCTTCTTCCGCAAGCTTCCAAATTTAGCTGAGCAACTTCCTCGCCAGATAGTGTTGAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCTCAGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCGGCCGAGGAGTTTAATGTAAAGGTACTTCCTACAATAGTTAAACTCTTTGCCTCCAATGATCGAGCTATTCGAGTTGGCCTTCTCCAACATATTGATCAGTATGGAGAGTCTTTATCACCACAAGTTGTTGATGAGCAAGTTTACCCTCATGTTGCTACTGGGTTTTCCGACACGTCTGCTTTTCTCAGGGAATTGACTCTGAAGTCTATGTTAATTCTGGCTCCAAAGTTGTCTCAAAGGACCATCTCAGGATCATTATTGAAGTATTTGTCAAAGTTGCAGGTTGATGAAGAACCAGCAATTAGAACAAATACTACCATATTACTAGGCAACATTGGAAGTTACTTAAACGAGGGAACAAGAAAAAGAGTTTTGATCAATGCATTTACAGTTCGTGCATTGCGTGATACTTTTCCGCCTGCTAGAGGAGCAGGTATTATGGCTTTGTGTGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAGTGATGTTAGAACCAAGGCGTTTCAAGCGGTTGATCAGTTTTTGCAGATAGCCAAGCAACATTATGAAAAGACAAATGCATCAGATACCACTGGTGCTGCAAGTGTGGGAAGCTCATCTGTTCCAGGAAATGCTAGTTTGCTCGGATGGGCTATGAGCTCTTTGACCTTGAAGGGTAAACCTTCTGATCATGTTCCCGTTGCTTCTGCAAGTTCGACTGCAGTCACTTCAACAGCTTCTAATGGTACCACAGTCATTGAGACGACAGCACCTGCTCGTGTAAGCTCCACAACAGATTTGGCTGAACACCCTGTCCCTACATCTCCTACATCAACGGATGGCTGGGGAGAACTTGAAAATGGAATTCAAGACGATCATGAAAGTGACAGGGATGGGTGGGATGAATTGGAACCACTTGAAGAGACAAAGCCAGCTCCAGCTCTTTCAAACATTCAAGCAGCACAAAGGCGGCCTGTTTCTCAACCTATTACACAGAAAAAACAAGCCTCGAATTCGCTGTCCAAAAGTACACCAAAATTGAACAAGGACGAGGACGATGATTTGTGGGGATCTATAGCAGCACCTGCTCCAAAAACTGCGAGACCTTTAAGTTTGAAAACAGCTCAAACTGATGATGATGATCCTTGGGCTGCCATTGCTGCTCCAGCACCCACTACCAAGGCCAAGCCGTTATCCACAGGCAGAGGTAGGGTGGCCAAACCTGCTGCTCCAAAATTAGGTGCTCAGCGGATAAACCGAACATCATCAGGCATGTAA 2382 0.4484 MFKFLKEVVGGSGTGVKDLPYNIAEPFPSAWGSWTHSRGTSKDDGSPVSVFSLSGSNAQDGHLAAARNGVKRLRTVRHPNILSFLHSAEIETYDAGSPKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYALGLHQIAKAVSFLNNDCKLIHGNVCLASVVVTPTLDWKLHAFDVLSEFDGSNETSSGQMLQYAWLVGSQYKPMELAKSDWDAIKKSPPWAIDSWGMGCLIHEVFSGLRLSKTEELRNTGSIPKSLLPDYQRLLSSMPSRRLNSSKLIENSEYFQNKLVDTIHFMEILSLKDSVERDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAASALTALLKMGSWLSAEEFNVKVLPTIVKLFASNDRAIRVGLLQHIDQYGESLSPQVVDEQVYPHVATGFSDTSAFLRELTLKSMLILAPKLSQRTISGSLLKYLSKLQVDEEPAIRTNTTILLGNIGSYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEVATRILPNVVVLTIDPDSDVRTKAFQAVDQFLQIAKQHYEKTNASDTTGAASVGSSSVPGNASLLGWAMSSLTLKGKPSDHVPVASASSTAVTSTASNGTTVIETTAPARVSSTTDLAEHPVPTSPTSTDGWGELENGIQDDHESDRDGWDELEPLEETKPAPALSNIQAAQRRPVSQPITQKKQASNSLSKSTPKLNKDEDDDLWGSIAAPAPKTARPLSLKTAQTDDDDPWAAIAAPAPTTKAKPLSTGRGRVAKPAAPKLGAQRINRTSSGM 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4042g00005 793 Gene3D Transferase(Phosphotransferase) domain 1 109 279 - -
Vium4042g00005 793 SUPERFAMILY ARM repeat 293 552 IPR016024 -
Vium4042g00005 793 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Vium4042g00005 793 Gene3D - 282 561 IPR011989 -
Vium4042g00005 793 MobiDBLite consensus disorder prediction 596 793 - -
Vium4042g00005 793 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 10 769 - -
Vium4042g00005 793 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4042g00005 793 MobiDBLite consensus disorder prediction 688 712 - -
Vium4042g00005 793 ProSiteProfiles HEAT repeat profile. 523 561 IPR021133 -
Vium4042g00005 793 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Vium4042g00005 793 MobiDBLite consensus disorder prediction 601 652 - -
Vium4042g00005 793 SUPERFAMILY Protein kinase-like (PK-like) 38 287 IPR011009 -
Vium4042g00005 793 MobiDBLite consensus disorder prediction 654 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4042g00005 Vium-Chr4042 28785 42560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4042g00005 70 291 MAP Kinase Kinase Kinase AT5G66850 23.932 1.71e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4042g00005 K08876 - gmx:100789813 1403.65