Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4042g00004 ATGGTTTCCCTGTCAACCACCACCCCCTTTCTACCCTTCACTGCACAAAACGCTTCCACCAGAATCCCTCCTCCCAACACCTTCCGTTACACCAACCACCGTCATAGGGATCACCGGAAGGTTGTGTGCGCCTGCATCGCACCTCCGCAGAACTTCAAGAGCCAGGACTCTTCCCCTGTTAATTTCAATGGTTTGCACAAATCAGAACAGCTGAGCGCGGCGCGGGATCAGGATGATGATTCTGATGTTCTTATTGAGTGTAGAGATGTGTACAAATCTTTCGGGGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATCAGGCACGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGTAAATCTACAGTTTTGAAGATTATAGCAGGACTTCTTGCTCCGGATAAGGGGGAAGTTTACATTCGAGGAAAAAAGAGGGTTGGTTTAGTAAGCGATGATAACCTATCTGGTCTTCGGATTGGATTAGTTTTCCAAAGTGCCGCACTCTTTGATTCTTTGTCTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCGAGTATGTCTGAGGACCAGATATCAGAGCTTGTCAAGGAAACTTTGGCTGCAGTTGGATTGAAGGGAGTTGAAGATCGGTTGCCTTCTGAATTATCAGGTGGGATGAAAAAGCGAGTTGCTTTGGCTCGTTCTATTATCTGTGACACCACAAAGGAATCAATTGAGCCAGAGGTGCTTTTATATGACGAACCAACTGCTGGACTTGATCCTATTGCATCTACTGTTGTTGAGGATCTGATTCGCTCAGTGCACATAAAAGGACGAGATGCTCGTGGAAAACCTGGGAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGATTGTTGTTTCTACACAAGGGAACGATTGTTTGGGAAGGAATGACTCATGAATTTACAACTACAACAAATCCAATTGTTCAGCAGGTTAGTTGTGTTGCTTTAAGAGTAAACAAGGACTTGTTTCTGAAATCTTTTACTGTGGGACATCAATTTCTTATCTAG 1077 0.4345 MVSLSTTTPFLPFTAQNASTRIPPPNTFRYTNHRHRDHRKVVCACIAPPQNFKSQDSSPVNFNGLHKSEQLSAARDQDDDSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDNLSGLRIGLVFQSAALFDSLSVRENVGFLLYEHSSMSEDQISELVKETLAAVGLKGVEDRLPSELSGGMKKRVALARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDARGKPGNIASYVVVTHQHSTIKRAIDRLLFLHKGTIVWEGMTHEFTTTTNPIVQQVSCVALRVNKDLFLKSFTVGHQFLI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4042g00004 358 SMART AAA_5 109 313 IPR003593 GO:0016887
Vium4042g00004 358 Pfam ABC transporter 100 255 IPR003439 GO:0005524
Vium4042g00004 358 CDD ABC_Org_Solvent_Resistant 85 333 - -
Vium4042g00004 358 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 85 336 IPR003439 GO:0005524
Vium4042g00004 358 Gene3D - 71 343 IPR027417 -
Vium4042g00004 358 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 13 334 - -
Vium4042g00004 358 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 325 IPR027417 -
Vium4042g00004 358 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4042g00004 Vium-Chr4042 17849 25632 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4042g00004 84 314 Calmodulin-binding Proteins AT2G36910 29.630 2.27e-17 82.0