Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4042g00003 ATGGTTTCCCTGTCAACCACCACCCCCTTTCTACCCTTCACTGCACAAAACGCTTCCACCAGAATCCCTCCTCCCAACACCTTCCGTTACACCAACCACCGTCATAGGGATCACCGGAAGGTTGTGTGCGCCTGCATCGCACCTCCGCAGAACTTCAAGAGCCAGGACTCTTCCCCTGTTAATTTCAATGGTTTGCACAAATCAGAACAGCTGAGCGCGGCGCGGGATCAGGATGATGATTCTGATGTTCTTATTGAGTGTAGAGATGTGTACAAATCTTTCGGGGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATCAGGCACGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGTAAATCTACAGTTTTGAAGATTATAGCAGGACTTCTTGCTCCGGATAAGGGGGAAGTTTACATTCGAGGAAAAAAGAGGGTTGGTTTAGTAAGCGATGATAACCTATCTGGTCTTCGGATTGGATTAGTTTTCCAAAGTGCCGCACTCTTTGATTCTTTGTCTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCGAGTATGTCTGAGGACCAGATATCAGAGCTTGTCAAGGAAACTTTGGCTGCAGTTGGATTGAAGGGAGTTGAAGATCGGTTGCCTTCTGAATTATCAGGTGGGATGAAAAAGCGAGTTGCTTTGGCTCGTTCTATTATCTGTGACACCACAAAGGAATCAATTGAGCCAGAGGTGCTTTTATATGACGAACCAACTGCTGGACTTGATCCTATTGCATCTACTGTTGTTGAGGATCTGATTCGCTCAGTGCACATAAAAGGACGAGATGCTCGTGGAAAACCTGGGAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGATTGTTGTTTCTACACAAGGGAACGATTGTTTGGGAAGGAATGACTCATGAATTTACAACTACAACAAATCCAATTGTTCAGCAGTTTGCATCCGGCAGCCTAGATGGTCCTATCAAATATTAG 1038 0.4422 MVSLSTTTPFLPFTAQNASTRIPPPNTFRYTNHRHRDHRKVVCACIAPPQNFKSQDSSPVNFNGLHKSEQLSAARDQDDDSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGEVYIRGKKRVGLVSDDNLSGLRIGLVFQSAALFDSLSVRENVGFLLYEHSSMSEDQISELVKETLAAVGLKGVEDRLPSELSGGMKKRVALARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDARGKPGNIASYVVVTHQHSTIKRAIDRLLFLHKGTIVWEGMTHEFTTTTNPIVQQFASGSLDGPIKY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4042g00003 345 SMART AAA_5 109 313 IPR003593 GO:0016887
Vium4042g00003 345 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 13 345 - -
Vium4042g00003 345 Pfam ABC transporter 100 255 IPR003439 GO:0005524
Vium4042g00003 345 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 325 IPR027417 -
Vium4042g00003 345 CDD ABC_Org_Solvent_Resistant 85 334 - -
Vium4042g00003 345 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 85 336 IPR003439 GO:0005524
Vium4042g00003 345 Gene3D - 71 337 IPR027417 -
Vium4042g00003 345 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4042g00003 Vium-Chr4042 17217 25629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4042g00003 84 314 Calmodulin-binding Proteins AT2G36910 29.630 2.13e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4042g00003 - - vum:124836515 660.218