Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4039g00001 ATGCCATCCCGACAACTCTCCACCTCATCAGACACACCGCCACATCATCATCACCACCACTTTTTCATACCTCTCCTCGCCGTCACCCTCTCAGCCTTCTCCCTCCTCCTTCTCTTCCTCTTCCTCTGCCTCCACCGTACCCTCACCCGCAAACGCACCGCCCACCCTCCTTCTCCTCCTCCTTCCTCTTCCCCCCCGCACCGCCTCTCCTTCTCCGTCCTCCGCCGCGCCACCAATTCCTTCTCCTCCCGCCTCGGCCACGGCGGCTTTGGTCCCGTATTCGCCGGCACCCTCGCCGGAGTCCCGGTCGCCGTCAAGCTCATGGACTCTGCTTCCTCCCACCAGGGAGAGCGGGAGTTCCACAACGAGCTCTTTTTCGCATCCAAGCTCCTCTCTCCCCACGTCATCACCGCCACGCACTTCTCCTCTGACCCCAAACGACGCCGCTTCCTCTTGGTCTACGAGCTCATGCAAAACGGCAACCTCCAAGACGCGCTTTTGCACCGCAAGTGCCCCGAACTCTCGAACTGGAACACCCGCTTCTCAATCATTCTCAACATAGCAAAAGGAATTCACTTTCTCCACTCCTGTGACCCCCCTGTTATCCACGGCGACATAAAGCCGAGTAACGTTTTGCTTGATAGGGATTTCTCTCCCAGAATTGGCGACTTCGGGTTAGCGAGGCTGAGCTCGGAGCCTCCGAGGTTTGAAATTGAGGTGCTGGAGTGTGGTAGTGTTAATAATGATGAAGAGAAGCGGAAGGTGAAGGAGGAGGAGGTTGAGGATTGCGGATCGGTGGCGAGTACTCACAGTGTTTTTATGGAAGAAAGTAGCTTGGGGGTGGAGCAATCTCCTTCGCCAGAGACTGCGGCGATGATGGCGATGACTTCGCCAGAGACGGGTTTGGCGGTGGCAGGGGCGTCGCCGGGGTTTGAGAAGGAGGATGCGAAGAAGATGAACGGGAAAGGGTTGAAGAGTAATTCGGTGAGGGATTGGTGGTGGAAGCATGAGAATGACGTTGGGAGTGGGGAGAGTAAGAAGGTTAAGGATTATGTGATGGAGTGGATTGGAAGGGATGTGAATAAGGAGAGGGTGAAGGGTGGAATTGAGTGTGGGGATGTGGAGATGGGAAAGGAGGAGGCCAAGAAGAAGAAGAAGAAGAGAAGGGTGAAGGAAATGGAATGGTGGGAGTCAATGGAAGAGGAGAACTTTGACGGGGTTGTGAAGGGGAAGAGAAAGACCGTGAGGGATTGGTGGAAAGATGAGTGTTTTGAGGAGAACGAAAAGAAGGATAAGAAGAAGAAGAAGAAGAGGAAGGGTGGGGGTGTAAAGAGTGATAATATTGAGAATGGTGATGATTGGTGGGTGAGTGATGATGCATTGGATAAGAGGAAGGGAAAGAGTAGGAGCAGAAACAACCGTGGGAACATGGATTGGTGGATGGATGGATTGAGTGGTGAGTTATGGAGAGGAAGGAGGAATAACAGCTTTGATTCTGCAAGTGGGGAGATTCCAAAGAGTGGTGGTGTTAGCAGTACTCCTAGTATGAGGGGAACTGTGTGTTATGTGGCTCCTGAGTGTGGCTATGGTGGGGATGTGACAGAGAAGTCTGATGTGTATAGTTTTGGGGTATTGTTGCTTGTCATAATTTCTGGGCGGCGACCACTTCAAGTGAGTGGTTCGCCTTTGTCTGAGTTTCAGAGAGCGAATCTACTTTCCTGGGCACGCCATTGTGCACGAAATGGGAAGCTTTTAGAGTTGGTTGACGAGTCTCTGCAGTTGTTGGATAAAGAGCAGGCTCTTCTCTGCATCAAGGTGGCTTTGCTTTGTCTGCAGAAGTCACCTATTCGTCGTCCTTCATTGAAGGAGGTTGTGGGAATTCTCAGTGGGTTGTTGGAACCACCCCAATTGCCTGTTGAGTACTCTCCTTCAACCCCTTCTCGCTACCCTTTCAAGTCTAGGAGAAAAGGAATGTAA 1977 0.523 MPSRQLSTSSDTPPHHHHHHFFIPLLAVTLSAFSLLLLFLFLCLHRTLTRKRTAHPPSPPPSSSPPHRLSFSVLRRATNSFSSRLGHGGFGPVFAGTLAGVPVAVKLMDSASSHQGEREFHNELFFASKLLSPHVITATHFSSDPKRRRFLLVYELMQNGNLQDALLHRKCPELSNWNTRFSIILNIAKGIHFLHSCDPPVIHGDIKPSNVLLDRDFSPRIGDFGLARLSSEPPRFEIEVLECGSVNNDEEKRKVKEEEVEDCGSVASTHSVFMEESSLGVEQSPSPETAAMMAMTSPETGLAVAGASPGFEKEDAKKMNGKGLKSNSVRDWWWKHENDVGSGESKKVKDYVMEWIGRDVNKERVKGGIECGDVEMGKEEAKKKKKKRRVKEMEWWESMEEENFDGVVKGKRKTVRDWWKDECFEENEKKDKKKKKKRKGGGVKSDNIENGDDWWVSDDALDKRKGKSRSRNNRGNMDWWMDGLSGELWRGRRNNSFDSASGEIPKSGGVSSTPSMRGTVCYVAPECGYGGDVTEKSDVYSFGVLLLVIISGRRPLQVSGSPLSEFQRANLLSWARHCARNGKLLELVDESLQLLDKEQALLCIKVALLCLQKSPIRRPSLKEVVGILSGLLEPPQLPVEYSPSTPSRYPFKSRRKGM 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4039g00001 658 Gene3D Transferase(Phosphotransferase) domain 1 65 246 - -
Vium4039g00001 658 MobiDBLite consensus disorder prediction 429 449 - -
Vium4039g00001 658 SMART serkin_6 79 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4039g00001 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Vium4039g00001 658 PANTHER OS07G0586332 PROTEIN 1 656 IPR044576 -
Vium4039g00001 658 ProSiteProfiles Protein kinase domain profile. 79 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4039g00001 658 Pfam Protein kinase domain 83 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4039g00001 658 Pfam Protein tyrosine and serine/threonine kinase 514 626 IPR001245 GO:0004672|GO:0006468
Vium4039g00001 658 Gene3D Transferase(Phosphotransferase) domain 1 495 637 - -
Vium4039g00001 658 SUPERFAMILY Protein kinase-like (PK-like) 56 647 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4039g00001 Vium-Chr4039 1555 4486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4039g00001 506 625 Receptor kinase-like Gene Family AT3G58690 34.921 2.15e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vium4039g00001 Pkinase 4.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4039g00001 - - gmx:100794183 1008.82