Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4034g00009 ATGGCCGAAACTCGGAGATCCACGGGCACCGTTAAGTGGTTCAACGCGCAGAAGGGCTTCGGATTCATAACTCCCCAGGACGGCTCCGAAGATCTCTTCGTTCACTTCACTTCCATCCGATCCGACGGCTACCGCTCCTTGACCGAGGGCCAGTCTGTCGAGTTCCTACTCGATTACGGCGACGACGGCCGTGCCATGGCCGTCGACGTCACCTCCGCCGTTAGATCTCGCCGTCCAGGAGGTTTTCGCGGTGGGAGCGGGAGAGGAAGAGGACGCTACGGCGGAGGGGAAGGCCGTGGTGGAGGGATCGGCCGGAGAGGGGCAGGAGGTTACGGCGGTGGAGGAGGAGGACCTGAGTGTTATAATTGTGGAAGAATAGGTCACTTGGCTAGGGATTGTTACCACGGACAGGGTGGTGGTGGTGGTGGTGCAGGTGGTGATGGTAGGATACGGAGACGCGGTGGAGGAGGAGGCGGCGGCGGTGGTGGAGGAGGGTGTTATAACTGTGGGGAAGAAGGGCATTTTGCAAGGGAATGTCCGAACGTTGGGAAATTAAATGAGTGA 564 0.594 MAETRRSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTSAVRSRRPGGFRGGSGRGRGRYGGGEGRGGGIGRRGAGGYGGGGGGPECYNCGRIGHLARDCYHGQGGGGGGAGGDGRIRRRGGGGGGGGGGGGCYNCGEEGHFARECPNVGKLNE 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4034g00009 187 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Vium4034g00009 187 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Vium4034g00009 187 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Vium4034g00009 187 FunFam Cold shock protein CspC 6 73 - -
Vium4034g00009 187 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Vium4034g00009 187 Gene3D - 162 185 - -
Vium4034g00009 187 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Vium4034g00009 187 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Vium4034g00009 187 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Vium4034g00009 187 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Vium4034g00009 187 SMART csp_8 8 73 IPR011129 GO:0003676
Vium4034g00009 187 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Vium4034g00009 187 MobiDBLite consensus disorder prediction 77 105 - -
Vium4034g00009 187 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 182 - -
Vium4034g00009 187 SUPERFAMILY Retrovirus zinc finger-like domains 109 182 IPR036875 GO:0003676|GO:0008270
Vium4034g00009 187 ProSiteProfiles Zinc finger CCHC-type profile. 120 133 IPR001878 GO:0003676|GO:0008270
Vium4034g00009 187 Gene3D - 95 143 - -
Vium4034g00009 187 Pfam Zinc knuckle 165 181 IPR001878 GO:0003676|GO:0008270
Vium4034g00009 187 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Vium4034g00009 187 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Vium4034g00009 187 Gene3D - 1 71 IPR012340 -
Vium4034g00009 187 ProSiteProfiles Zinc finger CCHC-type profile. 166 181 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4034g00009 Vium-Chr4034 84112 85322 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vium4034g00009 CSD 4e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4034g00009 - - gmx:100815773 211.46