Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4034g00003 ATGGATGGGAAGCCTAATCCGGATTCCTCCTCCCCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAACGACACCGACCACTCGGTTCAATGCAGTCCAATAGCATAAGGCCAAGGCGCACGCTACTTCCACAACGAAAGCTATCTAACACACCCTCCGACCCCACCAATTCTCAAGAACAAGCTTCTTCCAATGTCTCACTCAACACCGTCGTCCCTTCCCAAAACCTAGACGTTCAGAAGAAAGATCAATTTTCAGTTCACACAAATTCTACTGCGCAGGATGCTAAAGCCACCAATGAGTTGGAGAATTTATCGTCTCACATGGGTTCGCTTGGATTCGCAGAAATGGAGTGGGTTGAAGGCAACCAAATTGAAGCATCGTCGTCATCATCATTGCTAGGATGCAACCAGAAGGGGGATGTTCAGCAGGCTGGCTTTGACGCGAGTTTGAGATGTGATAGTGGAGTGAGTTCCGTGTTGCCAAAGAGAAGTGTGGTTACTCAGGATCATTTGCAGCAATTCAGTAGCTTTTTGAGTCAGCCAGCTACCCACTCTTCGGTTTTGGGACCTTCATGTGCTACAACAACCTCAGTTCATTCAACTTCGGCGCCTATGCTAAATTCAACAACACGATATTCTCATTCGCATCTAGACGGTGGCTCAAATGTGACTGCTGAGCCTTTTGGGGAGGTTAATGCTAATCCTCGTCCTGTAACTGAAGGGGTTGTGAAATCAGTAAATGTTTTCCAAAAGGAAACCAACAGAATGTTGGTGGATCGGGGAGCAGAAGCTGAAGTGCCGGCCTCTGATCTTGGTATTGGTGATGCAGAATTGGTGTCTAAGGAGAGCAGTCGATCTACGGAGCAACAAGGGGGGGTTTTGAAAGAATCTGGCAATTCTAAATATACTTGGGATGATGGTAAAGGGAAAGAGGCTGTGGATGTTGCCACTATACAACCGCAGGTACTACCTCCCACATCCACAACCACATGTTCAGATGTGAAGTTGGAGTCTTCTAGGGTAGAAAAGCGAGAGAAGATTGGAAGTAGTAAAGGTGCATCAGCTCCCCGTAAGAGGACTTATGACCCTGATTTGTTTTTTAAAGTTAATGGAAAGCTTTACCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCATCGGACTGTAGGATATTTGCCCTTAAAAAGATCAAGCTCAAGGGTCGTGATTATGCTACTGCATTTGGGTTTTGTCAAGAGATCGAGTATCTCAATAGGCTGAAAGGAAAGGATAACATCATACAGCTCATAGATTATGAGGTGACAGACAAGGCATTGCTTGAGGAAGTTATGAAAGGCTCTTTAAGTAATAGAGATGGCCGGGTCAAGGATGATGGATGTATATACATGGTCCTTGAATATGGAGAAATTGATTTGGCTCACATGTTGTCTCAGAAGTGGAAGGAACTGGATGGGAGCCACCGGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCTAGCTGTCAACACTATTCATGAGGAACGTATTGTGCACTCAGACTTGAAGCCAGCTAACTTCCTTCTTGTCAAAGGTTCCCTAAAACTAATTGATTTTGGTATAGCCAAAGCAATAATGAATGACACAACCAACATCCAACGGGATTCACAGGTGGGTACACTTAGTTACATGTCTCCAGAGGCATTTATGTGTAATGAGACTGATGCGAACGGAAACATCATAAAGTGTGGCCGGTCATCAGATATATGGTCCCTGGGTTGCATCCTTTATCAAATGGTATATGGGAGAACGCCTTTTTCTGATTACAAGACATTTTGGGCCAAATTCAAGGTCATAACAGATCCACATCATGAAATTACATATGAACCAGTTTCAAACCCATGGCTTTTGGATCTTATGATGAGGTGTTTAACATGGGACCGCAATCAAAGGTGGAGAATACCTCAGCTACTGGAACATCCTTTTCTTGTTCCACCTGTACCATCTCATCCATCTATGCCCCAAGATAATAATAGCTGTAAATTGCTACAACATATTTCTGAAACTTGTACATATGACCCAGAGGTATCTGAACTGTGTAGTCAGCTCCAACGGCTTCTAAGTGATTCAGTCGACAAAACAACTCACTCACTAAATTCACGAGATCAACAACTAAAACTGCTGTCCCAAATGTCAGATATGTGTATTCAGCTGCATGAACGTTTGAGAAATACTGGAAACAAGTAG 2262 0.4408 MDGKPNPDSSSPDFLRHVQAALKRHRPLGSMQSNSIRPRRTLLPQRKLSNTPSDPTNSQEQASSNVSLNTVVPSQNLDVQKKDQFSVHTNSTAQDAKATNELENLSSHMGSLGFAEMEWVEGNQIEASSSSSLLGCNQKGDVQQAGFDASLRCDSGVSSVLPKRSVVTQDHLQQFSSFLSQPATHSSVLGPSCATTTSVHSTSAPMLNSTTRYSHSHLDGGSNVTAEPFGEVNANPRPVTEGVVKSVNVFQKETNRMLVDRGAEAEVPASDLGIGDAELVSKESSRSTEQQGGVLKESGNSKYTWDDGKGKEAVDVATIQPQVLPPTSTTTCSDVKLESSRVEKREKIGSSKGASAPRKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIFALKKIKLKGRDYATAFGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSLSNRDGRVKDDGCIYMVLEYGEIDLAHMLSQKWKELDGSHRTIDENWLRFYWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMNDTTNIQRDSQVGTLSYMSPEAFMCNETDANGNIIKCGRSSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPHHEITYEPVSNPWLLDLMMRCLTWDRNQRWRIPQLLEHPFLVPPVPSHPSMPQDNNSCKLLQHISETCTYDPEVSELCSQLQRLLSDSVDKTTHSLNSRDQQLKLLSQMSDMCIQLHERLRNTGNK 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4034g00003 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Vium4034g00003 753 MobiDBLite consensus disorder prediction 28 66 - -
Vium4034g00003 753 SUPERFAMILY Protein kinase-like (PK-like) 369 679 IPR011009 -
Vium4034g00003 753 MobiDBLite consensus disorder prediction 280 304 - -
Vium4034g00003 753 Gene3D Transferase(Phosphotransferase) domain 1 489 671 - -
Vium4034g00003 753 FunFam serine/threonine-protein kinase mph1 isoform X2 368 455 - -
Vium4034g00003 753 MobiDBLite consensus disorder prediction 284 298 - -
Vium4034g00003 753 PANTHER MIXED LINEAGE PROTEIN KINASE 36 701 - -
Vium4034g00003 753 ProSiteProfiles Protein kinase domain profile. 375 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4034g00003 753 MobiDBLite consensus disorder prediction 23 66 - -
Vium4034g00003 753 Gene3D Phosphorylase Kinase; domain 1 368 455 - -
Vium4034g00003 753 FunFam serine/threonine-protein kinase mph1 isoform X1 489 671 - -
Vium4034g00003 753 CDD PKc_Mps1 373 668 IPR027084 -
Vium4034g00003 753 Pfam Protein kinase domain 375 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4034g00003 753 SMART serkin_6 375 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4034g00003 753 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4034g00003 Vium-Chr4034 14281 17876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4034g00003 381 669 MAP Kinase Kinase Kinase AT4G08470 28.912 3.16e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vium4034g00003 Pkinase 3.7e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4034g00003 K08866 - gmx:100788990 1242.64