Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4034g00002 ATGGATGGGAAGCCTAATCCGGATTCCTCCTCCCCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAACGACACCGACCACTCGGTTCAATGCAGTCCAATAGCATAAGGCCAAGGCGCACGCTACTTCCACAACGAAAGCTATCTAACACACCCTCCGACCCCACCAATTCTCAAGAACAAGCTTCTTCCAATGTCTCACTCAACACCGTCGTCCCTTCCCAAAACCTAGACGTTCAGAAGAAAGATCAATTTTCAGTTCACACAAATTCTACTGCGCAGGAAATGGAGTGGGTTGAAGGCAACCAAATTGAAGCATCGTCGTCATCATCATTGCTAGGATGCAACCAGAAGGGGGATGTTCAGCAGGCTGGCTTTGACGCGAGTTTGAGATGTGATAGTGGAGTGAGTTCCGTGTTGCCAAAGAGAAGTGTGGTTACTCAGGATCATTTGCAGCAATTCAGTAGCTTTTTGAGTCAGCCAGCTACCCACTCTTCGGTTTTGGGACCTTCATGTGCTACAACAACCTCAGTTCATTCAACTTCGGCGCCTATGCTAAATTCAACAACACGATATTCTCATTCGCATCTAGACGGTGGCTCAAATGTGACTGCTGAGCCTTTTGGGGAGGTTAATGCTAATCCTCGTCCTGTAACTGAAGGGGTTGTGAAATCAGTAAATGTTTTCCAAAAGGAAACCAACAGAATGTTGGTGGATCGGGGAGCAGAAGCTGAAGTGCCGGCCTCTGATCTTGGTATTGGTGATGCAGAATTGGTGTCTAAGGAGAGCAGTCGATCTACGGAGCAACAAGGGGGGGTTTTGAAAGAATCTGGCAATTCTAAATATACTTGGGATGATGGTAAAGGGAAAGAGGCTGTGGATGTTGCCACTATACAACCGCAGGTACTACCTCCCACATCCACAACCACATGTTCAGATGTGAAGTTGGAGTCTTCTAGGGTAGAAAAGCGAGAGAAGATTGGAAGTAGTAAAGGTGCATCAGCTCCCCGTAAGAGGACTTATGACCCTGATTTGTTTTTTAAAGTTAATGGAAAGCTTTACCAACGTCTTGGCAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCATCGGACTGTAGGATATTTGCCCTTAAAAAGATCAAGCTCAAGGGTCGTGATTATGCTACTGCATTTGGGTTTTGTCAAGAGATCGAGTATCTCAATAGGCTGAAAGGAAAGGATAACATCATACAGCTCATAGATTATGAGGTGACAGACAAGGCATTGCTTGAGGAAGTTATGAAAGGCTCTTTAAGTAATAGAGATGGCCGGGTCAAGGATGATGGATGTATATACATGGTCCTTGAATATGGAGAAATTGATTTGGCTCACATGTTGTCTCAGAAGTGGAAGGAACTGGATGGGAGCCACCGGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCTAGCTGTCAACACTATTCATGAGGAACGTATTGTGCACTCAGACTTGAAGCCAGCTAACTTCCTTCTTGTCAAAGGTTCCCTAAAACTAATTGATTTTGGTATAGCCAAAGCAATAATGAATGACACAACCAACATCCAACGGGATTCACAGGTGGGTACACTTAGTTACATGTCTCCAGAGGCATTTATGTGTAATGAGACTGATGCGAACGGAAACATCATAAAGTGTGGCCGGTCATCAGATATATGGTCCCTGGGTTGCATCCTTTATCAAATGGTATATGGGAGAACGCCTTTTTCTGATTACAAGACATTTTGGGCCAAATTCAAGGTCATAACAGATCCACATCATGAAATTACATATGAACCAGTTTCAAACCCATGGCTTTTGGATCTTATGATGAGGTGTTTAACATGGGACCGCAATCAAAGGTGGAGAATACCTCAGCTACTGGAACATCCTTTTCTTGTTCCACCTGTACCATCTCATCCATCTATGCCCCAAGATAATAATAGCTGTAAATTGCTACAACATATTTCTGAAACTTGTACATATGACCCAGAGGTATCTGAACTGTGTAGTCAGCTCCAACGGCTTCTAAGTGATTCAGTCGACAAAACAACTCACTCACTAAATTCACGAGATCAACAACTAAAACTGCTGTCCCAAATGTCAGATATGTGTATTCAGCTGCATGAACGTTTGAGAAATACTGGAAACAAGTAG 2199 0.4402 MDGKPNPDSSSPDFLRHVQAALKRHRPLGSMQSNSIRPRRTLLPQRKLSNTPSDPTNSQEQASSNVSLNTVVPSQNLDVQKKDQFSVHTNSTAQEMEWVEGNQIEASSSSSLLGCNQKGDVQQAGFDASLRCDSGVSSVLPKRSVVTQDHLQQFSSFLSQPATHSSVLGPSCATTTSVHSTSAPMLNSTTRYSHSHLDGGSNVTAEPFGEVNANPRPVTEGVVKSVNVFQKETNRMLVDRGAEAEVPASDLGIGDAELVSKESSRSTEQQGGVLKESGNSKYTWDDGKGKEAVDVATIQPQVLPPTSTTTCSDVKLESSRVEKREKIGSSKGASAPRKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIFALKKIKLKGRDYATAFGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSLSNRDGRVKDDGCIYMVLEYGEIDLAHMLSQKWKELDGSHRTIDENWLRFYWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMNDTTNIQRDSQVGTLSYMSPEAFMCNETDANGNIIKCGRSSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPHHEITYEPVSNPWLLDLMMRCLTWDRNQRWRIPQLLEHPFLVPPVPSHPSMPQDNNSCKLLQHISETCTYDPEVSELCSQLQRLLSDSVDKTTHSLNSRDQQLKLLSQMSDMCIQLHERLRNTGNK 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4034g00002 732 MobiDBLite consensus disorder prediction 28 66 - -
Vium4034g00002 732 FunFam serine/threonine-protein kinase mph1 isoform X2 347 434 - -
Vium4034g00002 732 CDD PKc_Mps1 352 647 IPR027084 -
Vium4034g00002 732 MobiDBLite consensus disorder prediction 24 66 - -
Vium4034g00002 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Vium4034g00002 732 Gene3D Transferase(Phosphotransferase) domain 1 468 650 - -
Vium4034g00002 732 Gene3D Phosphorylase Kinase; domain 1 347 434 - -
Vium4034g00002 732 MobiDBLite consensus disorder prediction 259 283 - -
Vium4034g00002 732 SMART serkin_6 354 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4034g00002 732 FunFam serine/threonine-protein kinase mph1 isoform X1 468 650 - -
Vium4034g00002 732 PANTHER MIXED LINEAGE PROTEIN KINASE 36 680 - -
Vium4034g00002 732 SUPERFAMILY Protein kinase-like (PK-like) 348 658 IPR011009 -
Vium4034g00002 732 Pfam Protein kinase domain 354 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4034g00002 732 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Vium4034g00002 732 ProSiteProfiles Protein kinase domain profile. 354 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium4034g00002 732 MobiDBLite consensus disorder prediction 263 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4034g00002 Vium-Chr4034 14281 17877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4034g00002 360 648 MAP Kinase Kinase Kinase AT4G08470 28.912 2.71e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vium4034g00002 Pkinase 3.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4034g00002 K08866 - gmx:100788990 1201.04