Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4034g00001 ATGAATAACCCGAACCCTCTAAACCAAAGGGAGGGGGAAAAGAAGAGCGCAGAGGTACCGTCCTTCCACCCATCAATGGAGAATTTGCAAAGTGCTCTTAAAGATTATAGCTTATCAGTTTCCACCGTCCCAGAAAAGGGTCGTTCTCTCTTCGCTTCAAGGGATTTCTATCCAGGGGATGTGATTATAGGCCAAGAACCTTACGTTTGTGTTCCAAACAACTCCTCACTTTCCACCCCCAAAAGGTGTGATGGATGTTTCATTACATCTGATGTCCTTAGAAGGTGCTCACGTTGCCATGTTGCATACTATTGCGGAACCGCATGTCAGAGGTCAGAGTGGAAGCTGCATCGCCTTGAGTGTGAGGTCCTCTCAAGGCTTGACAAGGATAAGAGAAAATCTGTCACGCCATCCATACGGCTGATGGTGAGACTTTACTTACGGAGGAAGTTGCAAGATGATAAGGTCACCCCAAGCACTGCTATGGACAACTACAACTTGGTGGAGGCATTAGTGGCTCACATGTCTGATATCACAGAGGAGCAGCTGGTGCTTTATGCACAGATGGCTAATCTTGTATATTCCATATTGAAATGGCCGGAAATCAATATAAAAGAGATTGCAGAAAATTTTTCTAAGTTTGCATGTAATGCTCATACTATTTGTGACAATGAGTTAAGACCTGTGGGAACAGGATTGTATCCCGTAATTTCCATAATCAATCATAGTTGTTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGGTCAGCATTGGTACGTGCTGTGCAACATATACCCGCAGGTACTGAGGTAGTGATAAGTTATATAGAGACTGCTGGAAGCACAATAACTCGACAGAGGGCTCTCAAAGAGCAGTATCTATTCACTTGTACATGTCCCCGCTGTTCTAAAATGGGCCAGAAAGATGATATACAAGAAAGTGAAATTTTAGAAGGATATAGATGCAAAAATGAAAAATGTGGTGGTTTCTTGCTTCGAACAACCGATGGGAAAGGATTTCAATGCCAAGGTTGCCAACTAGTTATGGGCAAGGAGGAGATAAAGGAAATTATAACTGAAATTGAATTGCTATCTGAAGAAGCAGCTTCTAAGTCTTCTTTCTCTTGCAGTTATCAAGAAGTTATTTCCATTTATAAAAAGATTGAAAAACTGCAAACAAAGCTCTATCATCCTTTCTCAATTAATTTGATGCAAACTCGAGAGAAGATTTTGAAGTCATTAATGGAGCTGGAACACTGGACTGAAGCTTTAGCATATTGCAAATTGACCATTCCATTCTATGAAAAAGTGTATCCATCTGTTCACCCTCTGCTTGGATTGCAATATTATACTTGTGGAAAACTAGAATGGTATTTGGGAGAGACAAAGGAAGCTGTTAAATCACTGACCAAGGCGGTGGATATACTACGGATTACTCATGGCACAAATACACGTTTCATGAAGGACCTCTTGATGAAGTTGGAAGAAGCCCATGCTGAAGCCTCTTACAAATGGTCCTCCATACACTGCTAG 1533 0.4155 MNNPNPLNQREGEKKSAEVPSFHPSMENLQSALKDYSLSVSTVPEKGRSLFASRDFYPGDVIIGQEPYVCVPNNSSLSTPKRCDGCFITSDVLRRCSRCHVAYYCGTACQRSEWKLHRLECEVLSRLDKDKRKSVTPSIRLMVRLYLRRKLQDDKVTPSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVYSILKWPEINIKEIAENFSKFACNAHTICDNELRPVGTGLYPVISIINHSCLPNSVLVFEGRSALVRAVQHIPAGTEVVISYIETAGSTITRQRALKEQYLFTCTCPRCSKMGQKDDIQESEILEGYRCKNEKCGGFLLRTTDGKGFQCQGCQLVMGKEEIKEIITEIELLSEEAASKSSFSCSYQEVISIYKKIEKLQTKLYHPFSINLMQTREKILKSLMELEHWTEALAYCKLTIPFYEKVYPSVHPLLGLQYYTCGKLEWYLGETKEAVKSLTKAVDILRITHGTNTRFMKDLLMKLEEAHAEASYKWSSIHC 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4034g00001 510 ProSiteProfiles Zinc finger MYND-type profile. 83 121 IPR002893 -
Vium4034g00001 510 ProSitePatterns Zinc finger MYND-type signature. 83 121 IPR002893 -
Vium4034g00001 510 SUPERFAMILY SET domain 35 275 IPR046341 -
Vium4034g00001 510 ProSiteProfiles SET domain profile. 36 276 IPR001214 GO:0005515
Vium4034g00001 510 SUPERFAMILY TPR-like 378 475 IPR011990 GO:0005515
Vium4034g00001 510 Pfam SET domain 47 275 IPR001214 GO:0005515
Vium4034g00001 510 Gene3D - 82 133 - -
Vium4034g00001 510 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 39 496 - -
Vium4034g00001 510 SMART set_7 36 282 IPR001214 GO:0005515
Vium4034g00001 510 Gene3D - 134 218 - -
Vium4034g00001 510 Gene3D Tetratricopeptide repeat domain 430 509 IPR011990 GO:0005515
Vium4034g00001 510 MobiDBLite consensus disorder prediction 1 21 - -
Vium4034g00001 510 Gene3D SET domain 49 302 IPR046341 -
Vium4034g00001 510 Pfam MYND finger 83 121 IPR002893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4034g00001 Vium-Chr4034 3097 10731 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium4034g00001 SET 5.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4034g00001 K11426 - gmx:100789518 799.66