Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4032g00014 ATGTCCCAAGAAAGTATGTCCTCAGCTGGTGGTGATGGTGGTGCCAGCATTGAACTTGGCGCAGCCTTACTTGGTTCTACTACCCTCACCAAGGGGAAGTACAACAGGATATGGCGTAGGAGTTTATACATAGGGATCCTCATCTCCGTGAAGAAGCCATCAACTTCCAGTTGTAACCATGTCACAGTTGATATAGAAGAGTGCATTAGCAGTGATACTGATGGAATTGTGAAGGGCCAGGGCTTGAATTCTCTTCCTGGGCTTGGTGGTCAACGTCAACACACACAGGATCACGGTGCTGTTGATGAGGGGAACCCCACTGTACCGTACACAGTTTTAGGAATTGACTTTTTTAAGTCTTTATTGAATAGCTACAAATGCTACCGCTGCACAATCTTGGTGCTGTTGGTTGCAGCTGGGTTGTCATTCACCATAGACTTCAAGCAGGAGGGACCTAAACATGGTTGGCATGATGGTGTTGGTATATTGTTTGCTCTTGTCCTGCTGGTTCTGGGAAAACCAGTTGCAAACTTTTTCTGTGAGAGGAAAAAGTTGAAATTGAAGGAGAGAAAGCAGGAGTTGGAATTCAGAGTGAAACGAGGTGAAGAGTCCGTAGTGGTTCCCGTTCCCGTATCTGATATTGTGGTGGGAGACACAGTTTTCCTGTGGCCAGGCGATGAGGTTCCAGCAGATGGTGAGCTCCAAAGTGATGGCATCCTTTTTGTGGTTGAGCTTGAAAATATAGAAAGCAAACAGAGGGGGCAGAATTCGTTTCTTAAATCTGGTTCAAAGGTGATCGGGGGCCAGGGAAGGATGTTGGTAAAATCAGTTACAACCAAAACCAATTTGGCTAAGACAGGTACCTGTAATTCTGAAAGGAGGGGTTTGTTGGAAAGACAAATTGAGAAGCCAATTTCTTACATTGACATGGTTGCACTTTCTATCTCTGTACTGGTTGCATTTGTGGTGTTAATTCGCCTAATTTGTGGAAAAGATGGGAGCAATGCAGACTTGCCAGAAATGAAAGGGAAGGTCTCAATTGGCCTGTTTATGAAAGTCCTTGAGAGAACTTTTCTAAGACCCCAAGGAAGGGTTTCCATTTTAACAGGTCTTGTCACTGTTGCAATACTTTGCGTTCAGCACGGAATGCCATTTGTGGTTACCATTTCTCTTAAGTACCAGATTGAAAAGGAAGTACGAAACCAAGATGTAGTTCTTAATGATTTGTCCGCTTGTACGACAATGGGGTTGGTAACTGTGATCTGTATTGATGTATCAGGGGAACTCATATCTAAACCAATGGAAGTTAGAAGAATATGGATGGGAGAGAAAGATATCAGCATGGTCGAGGGATCTGAAACAGAAAAACCAGTGCTTGACATGCTTAAACTAGGGGTTGGTTTATCAGTCCTAGCACCTGAGATTTATCTTTCCCCTGTGTTCAATTCACTTGTTTGTTGGGCAGAAACAACATGGGAAATGACCATGAGATCTTTCACAGAAGAAAAATTTGACATTCTTAAGCACAGCAAATTGAATTCTGGCAAAGAAGGCAGTGGAGTTTTGGTGAGAAAAATTGGGGATAGTGAAGTTCTGCACTTGCACTGGAGTGGAGCAGCATCCGCAATATTGGAGATGTGTTCGAGATACCATGACAGTAAAGGGAATTGCCACGCCATGGAAAATCAGAAAATCAAATTCGGGCAGGTGATTAAAGAGATGGAGGATAGTGGTCTTACGTCAATTGCTTTTGCTTATAAGCAAACAGATGGAGAAGAACTTGGGCAAGAAGAACTGATCTTGTCTGGACTGATAGGCCTGAAAGAAACTAGTCAAGAATCCATAAAATCAGCTTTGGAAAATTTCAGAAATGCTGCAAATGTACAGATCAAACTGGTCTCAGAGGATGGCATCGAGAAACTGGAAGGCATTGCTCGTGAACTAGGACTAGAACATGATGTTGTGCTAGAAGGTAAACAACTTCAAGATTTGAATGAGGAAGCTAGATTGGTCGAAGTGGATCGAGCCCATGTAATGGCAAGATTCCTTCCTGAGGACAAACTTCTCATGATACAGTGCTTGCAAGAGAAAGGCAAGGTGGTTGCATTCATTGGGNATAATGTGAATATATTATTGTTCTAA 2142 0.4295 MSQESMSSAGGDGGASIELGAALLGSTTLTKGKYNRIWRRSLYIGILISVKKPSTSSCNHVTVDIEECISSDTDGIVKGQGLNSLPGLGGQRQHTQDHGAVDEGNPTVPYTVLGIDFFKSLLNSYKCYRCTILVLLVAAGLSFTIDFKQEGPKHGWHDGVGILFALVLLVLGKPVANFFCERKKLKLKERKQELEFRVKRGEESVVVPVPVSDIVVGDTVFLWPGDEVPADGELQSDGILFVVELENIESKQRGQNSFLKSGSKVIGGQGRMLVKSVTTKTNLAKTGTCNSERRGLLERQIEKPISYIDMVALSISVLVAFVVLIRLICGKDGSNADLPEMKGKVSIGLFMKVLERTFLRPQGRVSILTGLVTVAILCVQHGMPFVVTISLKYQIEKEVRNQDVVLNDLSACTTMGLVTVICIDVSGELISKPMEVRRIWMGEKDISMVEGSETEKPVLDMLKLGVGLSVLAPEIYLSPVFNSLVCWAETTWEMTMRSFTEEKFDILKHSKLNSGKEGSGVLVRKIGDSEVLHLHWSGAASAILEMCSRYHDSKGNCHAMENQKIKFGQVIKEMEDSGLTSIAFAYKQTDGEELGQEELILSGLIGLKETSQESIKSALENFRNAANVQIKLVSEDGIEKLEGIARELGLEHDVVLEGKQLQDLNEEARLVEVDRAHVMARFLPEDKLLMIQCLQEKGKVVAFIGXNVNILLF 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4032g00014 713 Gene3D - 604 710 IPR023214 -
Vium4032g00014 713 Gene3D - 271 440 - -
Vium4032g00014 713 SUPERFAMILY Calcium ATPase, transmembrane domain M 130 416 IPR023298 -
Vium4032g00014 713 Pfam E1-E2 ATPase 202 326 - -
Vium4032g00014 713 PANTHER CATION TRANSPORTING ATPASE 117 709 - -
Vium4032g00014 713 Gene3D - 487 603 IPR023299 GO:0000166
Vium4032g00014 713 Gene3D - 177 270 - -
Vium4032g00014 713 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 501 607 IPR023299 GO:0000166
Vium4032g00014 713 SUPERFAMILY Calcium ATPase, transduction domain A 202 285 IPR008250 -
Vium4032g00014 713 SUPERFAMILY HAD-like 600 709 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4032g00014 Vium-Chr4032 50769 53483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4032g00014 74 709 Primary Pumps ATPases AT3G63380 31.729 1.51e-72 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4032g00014 K01537 - gmx:102661547 832.787