Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4032g00013 ATGGGATTTTGTCTTTATGAACAGGATCACGGTGCTGTTGATGAGGGGAACCCCACTGTACCGTACACAGTTTTAGGAATTGACTTTTTTAAGTCTTTATTGAATAGCTACAAATGCTACCGCTGCACAATCTTGGTGCTGTTGGTTGCAGCTGGGTTGTCATTCACCATAGACTTCAAGCAGGAGGGACCTAAACATGGTTGGCATGATGGTGTTGGTATATTGTTTGCTCTTGTCCTGCTGGTTCTGGGAAAACCAGTTGCAAACTTTTTCTGTGAGAGGAAAAAGTTGAAATTGAAGGAGAGAAAGCAGGAGTTGGAATTCAGAGTGAAACGAGGTGAAGAGTCCGTAGTGGTTCCCGTTCCCGTATCTGATATTGTGGTGGGAGACACAGTTTTCCTGTGGCCAGGCGATGAGGTTCCAGCAGATGGTGAGCTCCAAAGTGATGGCATCCTTTTTGTGGTTGAGCTTGATAATATAGAAAGCAAACAGAGGGGGCAGAATTCGTTTCTTAAATCTGGTTCAAAGGTGATCGGGGGCCAGGGAAGGATGTTGGTAAAATCAGTTACAACCAAAACCAATTTGGCTAAGATAGGTACCTGTAATTCTGAAAGGAGGGGTTTGTTGGAAAGACAAATTGAGAAGCCAATTTCTTACATTGACATGGTTGCACTTTCTATCTCTGTACTGGTTGCATTTGTGGTGTTAATTCGCCTAATTTGTGGAAAAGATGGGAGCAATGCAGACTTGCCAGAAATTAAAGGGAAGGTCTCAATTGGCCTGTTTATGAAAGTCCTTGAGAGAACTTTTCTAAGACCCCAAGGAAGGGTTTCCATTTTAACAGGTCTTGTCACTGTTGCAATACTTTGCGTTCAGCACGGAATGCCATTTGTGGTTACCATTTCTCTTAAGTACCAGATTGAAAAGGAAGTACGAAACCAAGATGTAGTTCTTAATGATTTGTCCGCTTGTACGACAATGGGGTTGGTAACTGTGATCTGTATTGATGTATCAGGGGAACTCATATCTAAACCAATGGAAGTTAGAAGAATATGGATGGGAGAGAAAGATATCAGCATGGTCGAGGGATCTGAAACAGAAAAACCAGTGCTTGACATGCTTAAACTAGGGGTTGGTTTATCAGTCCTAGCACCTGAGATTTATCTTTCCCCTGTGTTCAATTCACTTGTTTGTTGGGCAGAAACAACATGGGAAATGACCATGAGATCTTTCACAGAAGAAAAATTTGACATTCTTAAGCACAGCAAATTGAATTCTGGCAAAGAAGGCAGTGGAGTTTTGGTGAGAAAAATTGGGGATAGTGAAGTTCTGCACTTGCACTGGAGTGGAGCTGCATCCGCAATATTGGAGATGTGTTCGAGATACCATGACAGTAAAGGGAATTGCCACGCCATGGAAAATCAGAAAATCAAATTTGGGCAGGTGATTAAAGAGATGGAGGATAGTGGTCTTACGTCAATTGCTTTTGCTTATAAGCAAACAGATGGAGAAGAACTTGGGCAAGAAGAACTGATCTTGTCTGGACTGATAGGCCTGAAAGAAACTAGTCAAGAATCCATAAAATCAGCTTTGGAAAATTTCAGAAATGCTGCAAATGTACAGATCAAACTGGTCTCAGAGGATGGCATCGAGAAACTGGAAGGCATTGCTCGTGAACTAGGACTAGAACATGATGTTGTGCTAGAAGGTAAACAACTTCAAGATTTGAATGAGGAAGCTAGATTGGTCGAAGTGGATCGAGCCCATGTAATGGCAAGATTCCTTCCTGAGGACAAACTTCTCATGATACAGTGCTTGCAAGAGAAAGGCAAGGTGGTTGCATTCATTGGGTCAAGGTTGAGAACTAGTCTTACTTCAGTTTTAAAAGTAGCTGACGTGGGGATAGTGCTTGATTCTTTAAGCACAAGAGTGGATAGAGATAGTTGTGACATATCTATCAAATGCTTCAGTGCATTGAAACCCGTTGTGATAGCTGGCAGAAGTAAATACCACAATATTCAGAAGTTCATTCAACTTCAGCTGACATGTACCATATCAGGATTAGTCATAACCTTCATCACAGCCTGTACTGGAGATTCTCCGCTTGCACCGTTCCAGTTGATTTGGGTGAATGTTTTTGTGTGCATTCTGGGTGGCCTAATGATGGTAATGAAGTTAACCAACGAGGAACAACTTGCTAAACAACCATCTGATCACAGGAACCAAAATATAATAGCTAATGAAATCTGGAAAAGCATTGCTATTCAGATAGTCAATCTGCTCAACACCATGAAGTTGTTGAGAAAGGAAGTTCTTGTTCAGAGCTTCTATTTCTTGGGGGCCTTGGTTATCTGTTTTCTCATGCAAGTGGTGGCGATTGAGTATGCTAAAGGCCTGTCAGATTGCATGCACCTGAATGCTACGAGATGGGGTATCTGTGTCATGATTGGTGCTCTTGCATGGGTTTTTGAGTGGAGCATGAAGAATATTCTTCCAGTTATTCTGAATCCCAGCACCAATTATTCTTCCGAATTCAATACTTCACCTTCTTTCTTTCTTTCTCCATCTTTTTCATTTCTGATGCTACTTTTGCTCCCCATAGGACTGATTTTTAGTCAAATGGGAATGAACATGACACTTCGTTAG 2646 0.4169 MGFCLYEQDHGAVDEGNPTVPYTVLGIDFFKSLLNSYKCYRCTILVLLVAAGLSFTIDFKQEGPKHGWHDGVGILFALVLLVLGKPVANFFCERKKLKLKERKQELEFRVKRGEESVVVPVPVSDIVVGDTVFLWPGDEVPADGELQSDGILFVVELDNIESKQRGQNSFLKSGSKVIGGQGRMLVKSVTTKTNLAKIGTCNSERRGLLERQIEKPISYIDMVALSISVLVAFVVLIRLICGKDGSNADLPEIKGKVSIGLFMKVLERTFLRPQGRVSILTGLVTVAILCVQHGMPFVVTISLKYQIEKEVRNQDVVLNDLSACTTMGLVTVICIDVSGELISKPMEVRRIWMGEKDISMVEGSETEKPVLDMLKLGVGLSVLAPEIYLSPVFNSLVCWAETTWEMTMRSFTEEKFDILKHSKLNSGKEGSGVLVRKIGDSEVLHLHWSGAASAILEMCSRYHDSKGNCHAMENQKIKFGQVIKEMEDSGLTSIAFAYKQTDGEELGQEELILSGLIGLKETSQESIKSALENFRNAANVQIKLVSEDGIEKLEGIARELGLEHDVVLEGKQLQDLNEEARLVEVDRAHVMARFLPEDKLLMIQCLQEKGKVVAFIGSRLRTSLTSVLKVADVGIVLDSLSTRVDRDSCDISIKCFSALKPVVIAGRSKYHNIQKFIQLQLTCTISGLVITFITACTGDSPLAPFQLIWVNVFVCILGGLMMVMKLTNEEQLAKQPSDHRNQNIIANEIWKSIAIQIVNLLNTMKLLRKEVLVQSFYFLGALVICFLMQVVAIEYAKGLSDCMHLNATRWGICVMIGALAWVFEWSMKNILPVILNPSTNYSSEFNTSPSFFLSPSFSFLMLLLLPIGLIFSQMGMNMTLR 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4032g00013 881 Gene3D - 516 656 IPR023214 -
Vium4032g00013 881 Gene3D - 89 180 - -
Vium4032g00013 881 SUPERFAMILY HAD-like 333 718 IPR036412 -
Vium4032g00013 881 Gene3D - 181 353 - -
Vium4032g00013 881 Gene3D - 399 515 IPR023299 GO:0000166
Vium4032g00013 881 SUPERFAMILY Calcium ATPase, transduction domain A 114 198 IPR008250 -
Vium4032g00013 881 SUPERFAMILY Calcium ATPase, transmembrane domain M 42 831 IPR023298 -
Vium4032g00013 881 PANTHER CATION TRANSPORTING ATPASE 39 758 - -
Vium4032g00013 881 Gene3D - 657 761 - -
Vium4032g00013 881 Pfam E1-E2 ATPase 114 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4032g00013 Vium-Chr4032 45784 48785 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4032g00013 37 857 Primary Pumps ATPases AT3G63380 31.661 5.82e-110 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4032g00013 K01537 - gmx:102661547 1106.66