Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4032g00012 ATGGCCACCACTGCTTTCCAGCAATCAGCATTCGCTGGTCAAACAGCTCTGAAGCAGGTCAATGAGCTCGTCCGCAAGACCGGTGGCTCCGGCCAAGGTCGCACCAACATGCGCCGCACCGTCAAAAGTGCTCCTCAGAGCATTTGGTATGGCCCTGACCGTCCCAAGTACTTGGGTCCATTTTCTGACCAGATTCCATCATACCTGACCGGTGAATTCCCTGGTGACTACGGATGGGACACGGCTGGATTATCAGCTGACCCTGAAACCTTTGCCAGGAACCGTGAGTTGGAGGTGATTCACAGCAGATGGGCCATGCTTGGTGCTCTAGGATGCACCTTCCCAGAGATTCTTGAGAAGAATGGTGTGAAATTCGGTGAGGCAGTGTGGTTTAAGGCTGGTGCACAGATCTTCTCTGAGGGAGGACTTGACTATTTGGGGAACCCAAACCTGATCCATGCTCAGAGCATTCTTGCCATCTGGGCTGTGCAGGTTGTGCTTATGGGGTTTGTTGAAGGTTACAGAGTCGGTGGAGGACCTCTTGGTGAAGGGTTAGACCCTATCTACCCTGGTGGTGCTTTTGACCCTCTTGGTCTTGCTGATGACCCTGATGCATTTGCTGAGTTGAAGGTCAAGGAACTCAAGAATGGTCGCTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTGTCACTGGCAAGGGCCCTATTCAGAACCTTTACGACCATGTTGCTGACCCTGTTGCCAACAATGCTTGGGCTTATGCCACCAACTTCGTCCCTGGACAATGA 798 0.5201 MATTAFQQSAFAGQTALKQVNELVRKTGGSGQGRTNMRRTVKSAPQSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAYATNFVPGQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4032g00012 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 264 IPR001344 GO:0009765|GO:0016020
Vium4032g00012 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Vium4032g00012 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Vium4032g00012 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Vium4032g00012 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4032g00012 Vium-Chr4032 40794 42222 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4032g00012 1 265 Chloroplast and Mitochondria Gene Families AT2G05070 86.792 1.66e-177 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4032g00012 K08913 - gmx:100793702 538.11