Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium4032g00002 ATGCACCCTCCACGACAGCAGTCACAAGGTGGTGAAGGACTACGAACTTCTCTGTCTCTAGTTTCTTCAGATCCCCGCCTTTCACTTGAGGAGCCTAGATCAAACACTGGCAATCTCCGTGAATCTCCGACTGAAAGTGCCAGTTCTCGGGAAATTTGGCCTCCTGCTGCAGCAATAAAAAGGGAGAGTGACTTCCCTGATCAGGCTGTTATACGTCGTGTTTCTGGTTCTGACAAAATTACTCTTCATGACGTTGCAAGAGAACGAGTTGATATAATTTGTGAAAAAATGGTTCATCTACCTTCCGAATTTCTTGACGAACTGAAAAATGAACTTCGAGTTATTCTTGAAGGAGGGAATGGCTCGCAGCATAGAGAGGAATTTTTTATTTTGCAGAAGCTTGTTCAGAGTAGATCTGATTTAACAACCAACACATTGGCACGAACACATCGTGTGCAGCTCGAAATCCTTGTTGCCATAAATACTGGAATTCAGGGATTTTTACATCCTAGCATCAATCTATCTCAGGCTTCATTGATTGAGATATTTCTGTATAAGAGATGTAGAAACCTAGCTTGTGGGAGCCAGCTTCCTGCTGAAGATTGTACCTGTGAAACATGCACCAATGGAAATGGTTTCTGCAATCTTTGCATGTGTGTTATCTGCAGTAAGTTTGACTTTGAAGTAAATACATGCCGCTGGATTGGATGTGATTTGTGCTCTCATTGGACTCACACTGATTGTGCCATTCGCGAGCAACTTATTTGTGTGGGCCCTGCTACACAGAATGGAACAGGGCCAATCGAAATGGTATTTAAGTGTCAAGCATGCAATAGGACTTCAGAACTGCTGGGTTGGGTTAAAGATGTCTTCCAGCATTGTGCGATGTCATGGGATGGAGAGGCCCTGATTAGGGAACTTGATTTTGTCAGTAGGATCTTTCATGGAAGTAAAGACCCACGAGGGAGGAAACTCCACTGGAAGTCTGACGATCTCAAGGAAAATTTAAGAAGTGGCAAAGTCGAAACTACGGCTGCATGCACGGGAATATTGATGTTTTTCAAAGAGCTTGAGCTGGACTCTCAAAAGACCCTGGAAAATGTTGAAAGTGGAAGTGGAAGACTGATTGTTCCACAGGAGGCATGCAATAGAATTTCAGAGGTGGTGCATGAGGCTGTAAGAAATATGGAAATGGTAGCCAATGAGAAGATGAGAATGTTCAAGAAGGCTCGGTTGTCTTTTGATGCTTGTGAACGTGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTAAAAATGGATAGGCAAAAAAAGAAGTTAGAGATTGAAGAACTAGAGAAAATTGTGAGGCTTAAAAGTGCAGAGGCTGATATGTTCCAGATGAAGTCTAATGAAGCTAAAAGAGAAGCTGAGCGGCTCCAGAGGATTCTTCTTGCCAAGTCTGATAAATCAGAAGAAGAATATACCAGTAATTATTTGAAGCAAAGATTAAGTGAGGCCGAGGCTGAGAAGCAGTATCTGTATGAGAAGATCAAAATGCAGGAGTCTTCTCGTATATTGCAAAGCAGTAGTGGTGGTGACCCCTTGATGTTTTCCAAAATTCATGATCTTCTCTATAGTGTTCCTCCCAGTGCAGATGGTCCATCTAATGACTGCCATCCTTTTCGAACAAACCCATAA 1680 0.4268 MHPPRQQSQGGEGLRTSLSLVSSDPRLSLEEPRSNTGNLRESPTESASSREIWPPAAAIKRESDFPDQAVIRRVSGSDKITLHDVARERVDIICEKMVHLPSEFLDELKNELRVILEGGNGSQHREEFFILQKLVQSRSDLTTNTLARTHRVQLEILVAINTGIQGFLHPSINLSQASLIEIFLYKRCRNLACGSQLPAEDCTCETCTNGNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICVGPATQNGTGPIEMVFKCQACNRTSELLGWVKDVFQHCAMSWDGEALIRELDFVSRIFHGSKDPRGRKLHWKSDDLKENLRSGKVETTAACTGILMFFKELELDSQKTLENVESGSGRLIVPQEACNRISEVVHEAVRNMEMVANEKMRMFKKARLSFDACERELADKAREAGELKMDRQKKKLEIEELEKIVRLKSAEADMFQMKSNEAKREAERLQRILLAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKMQESSRILQSSSGGDPLMFSKIHDLLYSVPPSADGPSNDCHPFRTNP 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium4032g00002 559 Pfam Coiled-coil region of Oberon 408 538 IPR032535 -
Vium4032g00002 559 Pfam PHD - plant homeodomain finger protein 188 311 IPR032881 -
Vium4032g00002 559 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 28 540 IPR004082 -
Vium4032g00002 559 MobiDBLite consensus disorder prediction 1 52 - -
Vium4032g00002 559 MobiDBLite consensus disorder prediction 1 49 - -
Vium4032g00002 559 Coils Coil 428 483 - -
Vium4032g00002 559 CDD PHD_OBE1_like 218 277 IPR047578 -
Vium4032g00002 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 96 118 IPR004082 -
Vium4032g00002 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 179 200 IPR004082 -
Vium4032g00002 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 225 245 IPR004082 -
Vium4032g00002 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 443 463 IPR004082 -
Vium4032g00002 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 138 153 IPR004082 -
Vium4032g00002 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 153 168 IPR004082 -
Vium4032g00002 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 298 317 IPR004082 -
Vium4032g00002 559 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 482 504 IPR004082 -
Vium4032g00002 559 PIRSF UCP025218 1 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium4032g00002 Vium-Chr4032 9469 12387 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium4032g00002 188 290 PHD Gene Family AT5G57380 31.731 2.40e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium4032g00002 - - pvu:PHAVU_008G285600g 1016.53